Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/surf

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
malbec2	Linux (Ubuntu 20.04.2 LTS)/x86_64	ERROR	skipped	skipped	skipped
machv2	macOS 10.14.6 Mojave/x86_64	ERROR	skipped	skipped	skipped
tokay2	Windows Server 2012 R2 Standard/x64	ERROR	skipped	skipped	skipped

malbec2 Summary

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Package: surf

Version: 0.99.0

RVersion: 4.1

BiocVersion: 3.13

BuildCommand: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data surf

BuildTime: 0 minutes 35.66 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: surf_20210414181256

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: surf. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

malbec2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘surf/DESCRIPTION’ ... OK
* preparing ‘surf’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘surf.Rmd’ using rmarkdown
Quitting from lines 168-170 (surf.Rmd) 
Error: processing vignette 'surf.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘surf.Rmd’

SUMMARY: processing the following file failed:
  ‘surf.Rmd’

Error: Vignette re-building failed.
Execution halted

malbec2 CHECK output

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malbec2 BUILD BIN output

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machv2 Summary

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Package: surf

Version: 0.99.0

RVersion: 4.1

BiocVersion: 3.13

BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data surf

BuildTime: 0 minutes 44.94 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: surf_20210414181256

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: surf. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

machv2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘surf/DESCRIPTION’ ... OK
* preparing ‘surf’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘surf.Rmd’ using rmarkdown
Quitting from lines 168-170 (surf.Rmd) 
Error: processing vignette 'surf.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘surf.Rmd’

SUMMARY: processing the following file failed:
  ‘surf.Rmd’

Error: Vignette re-building failed.
Execution halted

machv2 CHECK output

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machv2 BUILD BIN output

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tokay2 Summary

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Package: surf

Version: 0.99.0

RVersion: 4.1

BiocVersion: 3.13

BuildCommand: C:\Users\biocbuild\bbs-3.13-bioc\R\bin/R CMD build --keep-empty-dirs --no-resave-data surf

BuildTime: 0 minutes 48.52 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: surf_20210414181256

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: surf. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

tokay2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file 'surf/DESCRIPTION' ... OK
* preparing 'surf':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'surf.Rmd' using rmarkdown
Quitting from lines 168-170 (surf.Rmd) 
Error: processing vignette 'surf.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'surf.Rmd'

SUMMARY: processing the following file failed:
  'surf.Rmd'

Error: Vignette re-building failed.
Execution halted

tokay2 CHECK output

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tokay2 BUILD BIN output

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