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URL:  https://git.bioconductor.org/packages/epimutacions
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 20.04.2 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: epimutacions
Version: 0.99.1
RVersion: 4.1
BiocVersion: 3.14
BuildCommand: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data epimutacions
BuildTime: 1 minutes 53.97 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: epimutacions_20210924113045
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: epimutacions. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 1. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘epimutacions/DESCRIPTION’ ... OK
* preparing ‘epimutacions’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘epimutacions.Rmd’ using rmarkdown
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
snapshotDate(): 2021-09-23
Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.1 (2021-08-10)
Installing package(s) 'epimutacionsData'
Warning in .inet_warning(msg) :
  package 'epimutacionsData' is not available for Bioconductor version '3.14'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Installation paths not writeable, unable to update packages
  path: /home/biocbuild/bbs-3.14-bioc/R/library
  packages:
    flowTime
downloading 1 resources
retrieving 1 resource
loading from cache
Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.1 (2021-08-10)
Installing package(s) 'epimutacionsData'
Warning in .inet_warning(msg) :
  package 'epimutacionsData' is not available for Bioconductor version '3.14'

A version of this package for your version of R might be available elsewhere,
see the ideas at
https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages
Installation paths not writeable, unable to update packages
  path: /home/biocbuild/bbs-3.14-bioc/R/library
  packages:
    flowTime
downloading 1 resources
retrieving 1 resource
loading from cache
Quitting from lines 292-294 (epimutacions.Rmd) 
Error: processing vignette 'epimutacions.Rmd' failed with diagnostics:
'base' does not exists
--- failed re-building ‘epimutacions.Rmd’

SUMMARY: processing the following file failed:
  ‘epimutacions.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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