Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/sciCNV
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
merida1 macOS 10.14.6 Mojave/x86_64   TIMEOUT     skipped     skipped     skipped  
nebbiolo1 Linux (Ubuntu 20.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

merida1 Summary

[top]

Package: sciCNV
Version: 0.99.45
RVersion: 4.2
BiocVersion: 3.15
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sciCNV
BuildTime: 14 minutes 59.96 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: sciCNV_20211213081120
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: sciCNV. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: -9.

merida1 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘sciCNV/DESCRIPTION’ ... OK
* preparing ‘sciCNV’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
TIMEOUT: R CMD build exceeded 15 mins

merida1 CHECK output

[top]


                				
 

                            
 
                                
                				
merida1 BUILD BIN output
 
                    			
[top]

                				
 
                					

                				
 
                
		    
		        			

                			
                			
nebbiolo1 Summary
 
                			
[top]

                			
 
                				
 
						        
Package: sciCNV
 
                					
Version: 0.99.45
 
                					
RVersion: 4.2
                
 
                					
BiocVersion: 3.15
                
 

                					
BuildCommand: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data sciCNV
 
                					
BuildTime: 7 minutes 47.63 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: sciCNV_20211213081120
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: sciCNV. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
nebbiolo1 BUILD SRC output
 
                    			
[top]

                				
 
                					
===============================

 R CMD BUILD

===============================

* checking for file ‘sciCNV/DESCRIPTION’ ... OK
* preparing ‘sciCNV’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  graphical parameter "type" is obsolete
Warning in doTryCatch(return(expr), name, parentenv, handler) :
  graphical parameter "type" is obsolete
Quitting from lines 454-471 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
figure margins too large
--- failed re-building ‘Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted


                				
 

                			
 
                			    
                				
nebbiolo1 CHECK output
 
                    			
[top]

                				
 
                					

                				
 

                            
 
                                
                				
nebbiolo1 BUILD BIN output
 
                    			
[top]