Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/SPOTlight
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
merida1 macOS 10.14.6 Mojave/x86_64   ERROR     skipped     skipped     skipped  
nebbiolo1 Linux (Ubuntu 20.04.4 LTS)/x86_64   ERROR     skipped     skipped     skipped  

merida1 Summary

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Package: SPOTlight
Version: 0.99.2
RVersion: 4.2
BiocVersion: 3.15
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SPOTlight
BuildTime: 0 minutes 5.39 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: SPOTlight_20220131201411
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: SPOTlight. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 1. Checking git clone status: 1. Installing package status: 1. Build Package status: 1.

merida1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘SPOTlight/DESCRIPTION’ ... OK
* preparing ‘SPOTlight’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘SPOTlight’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE,  :
  there is no package called ‘Biobase’
Error in .requirePackage(package) : 
  unable to find required package ‘Biobase’
Calls: <Anonymous> ... .recacheSubclasses -> getClassDef -> .requirePackage
Execution halted
ERROR: lazy loading failed for package ‘SPOTlight’
* removing ‘/private/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T/RtmpK6YdA3/Rinst12b832f13ce4d/SPOTlight’
      -----------------------------------
ERROR: package installation failed

merida1 CHECK output

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merida1 BUILD BIN output
 
                    			
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nebbiolo1 Summary
 
                			
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Package: SPOTlight
 
                					
Version: 0.99.2
 
                					
RVersion: 4.2
                
 
                					
BiocVersion: 3.15
                
 

                					
BuildCommand: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SPOTlight
 
                					
BuildTime: 0 minutes 13.14 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: SPOTlight_20220131201411
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: SPOTlight. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
nebbiolo1 BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘SPOTlight/DESCRIPTION’ ... OK
* preparing ‘SPOTlight’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘SPOTlight’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘plotImage’ with signature ‘"SpatialExperiment"’: no definition for class “SpatialExperiment”
in method for ‘plotSpatialScatterpie’ with signature ‘"SpatialExperiment","ANY"’: no definition for class “SpatialExperiment”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘SPOTlight’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called ‘DelayedArray’
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpKW3fUD/Rinstbc1cfd1e23b4/SPOTlight’
      -----------------------------------
ERROR: package installation failed


                				
 

                			
 
                			    
                				
nebbiolo1 CHECK output
 
                    			
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nebbiolo1 BUILD BIN output
 
                    			
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