Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/single
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 20.04.4 LTS)/x86_64   ERROR     skipped     skipped     skipped  
merida1 macOS 10.14.6 Mojave/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: single
Version: 0.99.7
RVersion: 4.2
BiocVersion: 3.15
BuildCommand: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data single
BuildTime: 0 minutes 37.96 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: single_20220316095151
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: single. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘single/DESCRIPTION’ ... OK
* preparing ‘single’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘single.Rnw’ using Sweave
Warning: glm.fit: algorithm did not converge
Warning: glm.fit: algorithm did not converge

Error: processing vignette 'single.Rnw' failed with diagnostics:
 chunk 11 
Error in quality(corrected_reads) : could not find function "quality"

--- failed re-building ‘single.Rnw’

SUMMARY: processing the following file failed:
  ‘single.Rnw’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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merida1 Summary
 
                			
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Package: single
 
                					
Version: 0.99.7
 
                					
RVersion: 4.2
                
 
                					
BiocVersion: 3.15
                
 

                					
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data single
 
                					
BuildTime: 1 minutes 46.80 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: single_20220316095151
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: single. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
merida1 BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘single/DESCRIPTION’ ... OK
* preparing ‘single’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘single.Rnw’ using Sweave
Warning: glm.fit: algorithm did not converge
Warning: glm.fit: algorithm did not converge

Error: processing vignette 'single.Rnw' failed with diagnostics:
 chunk 11 
Error in quality(corrected_reads) : could not find function "quality"

--- failed re-building ‘single.Rnw’

SUMMARY: processing the following file failed:
  ‘single.Rnw’

Error: Vignette re-building failed.
Execution halted


                				
 

                			
 
                			    
                				
merida1 CHECK output
 
                    			
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merida1 BUILD BIN output
 
                    			
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