nebbiolo1 Summary
[top]
Package: RAREsim |
Version: 0.99.0 |
RVersion: 4.2
|
BiocVersion: 3.15
|
BuildCommand: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RAREsim |
BuildTime: 0 minutes 3.80 seconds |
CheckCommand: BiocCheckGitClone('RAREsim') && /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --no-vignettes --timings RAREsim_0.99.0.tar.gz && BiocCheck('RAREsim_0.99.0.tar.gz', `new-package`=TRUE) |
CheckTime: 0 minutes 15.31 seconds |
BuildBinCommand: |
BuildBinTime: |
PackageFileSize: 288.72 KiB |
BuildID:: RAREsim_20220325131523 |
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: RAREsim. Starting Build package. Starting Check package. |
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 0. Checking Package status: 1. |
nebbiolo1 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘RAREsim/DESCRIPTION’ ... OK
* preparing ‘RAREsim’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘RAREsim_0.99.0.tar.gz’
nebbiolo1 CHECK output
[top]
===============================
BiocCheckGitClone('RAREsim')
===============================
This is BiocCheckGitClone version 1.31.36. BiocCheckGitClone is a work
in progress. Output and severity of issues may change.
* Checking valid files...
* ERROR: System Files found that should not be git
tracked:.DS_Store
* ERROR: System Files found that should not be git
tracked:.Rhistory
* ERROR: System Files found that should not be git
tracked:data/.DS_Store
* ERROR: System Files found that should not be git
tracked:data/.Rhistory
* ERROR: System Files found that should not be git
tracked:R/.DS_Store
* ERROR: System Files found that should not be git
tracked:R/.Rapp.history
* ERROR: System Files found that should not be git
tracked:vignettes/.DS_Store
.DS_Store
.Rhistory
data/.DS_Store
data/.Rhistory
R/.DS_Store
R/.Rapp.history
vignettes/.DS_Store
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
Summary:
ERROR count: 7
WARNING count: 0
NOTE count: 0
For detailed information about these checks, see the BiocCheck
vignette, available at
https://bioconductor.org/packages/3.15/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
BiocCheckGitClone FAILED.
===============================
R CMD CHECK
===============================
* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/2571/RAREsim_20220325131523/RAREsim.Rcheck’
* using R Under development (unstable) (2022-03-17 r81925)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RAREsim/DESCRIPTION’ ... OK
* this is package ‘RAREsim’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RAREsim’ can be installed ... [1s/1s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [1s/1s]
[1s/1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
===============================
BiocCheck('RAREsim_0.99.0.tar.gz')
===============================
This is BiocCheck version 1.31.36. BiocCheck is a work in progress.
Output and severity of issues may change. Installing package...
* Checking Package Dependencies...
Warning in system2(cmd, args, stdout = TRUE, stderr = FALSE, env = "R_DEFAULT_PACKAGES=NULL") :
running command 'R_DEFAULT_PACKAGES=NULL '/home/biocbuild/bbs-3.15-bioc/R/bin/R' -q --vanilla --slave -f /home/biocbuild/bbs-3.15-bioc/R/library/BiocCheck/script/checkBadDeps.R --args "/home/pkgbuild/packagebuilder/workers/jobs/2571/RAREsim_20220325131523/RAREsim_0.99.0.tar.gz" "/tmp/RtmpSjirDp/file429063c3bd984/lib" 2>/dev/null' had status 1
* Checking if other packages can import this one...
* Checking to see if we understand object initialization...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R Version dependency...
* NOTE: Update R version dependency from 4.1.0 to 4.2.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking vignette directory...
* NOTE: 'sessionInfo' not found in vignette(s)
Missing from file(s):
vignettes/RAREsim_Vignette.Rmd
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of RAREsim...
* Checking coding practice...
* NOTE: Avoid 1:...; use seq_len() or seq_along()
Found in files:
afs.R (line 93, column 14)
afs.R (line 102, column 14)
fit_afs.R (line 59, column 11)
fit_afs.R (line 71, column 18)
* NOTE: Avoid using '=' for assignment and use '<-' instead
Found in files:
R/afs.R (line 67, column 19)
R/afs.R (line 68, column 18)
R/afs.R (line 69, column 15)
R/afs.R (line 72, column 19)
R/afs.R (line 73, column 18)
R/afs.R (line 74, column 15)
R/afs.R (line 77, column 20)
R/afs.R (line 78, column 19)
R/afs.R (line 79, column 15)
R/afs.R (line 82, column 19)
R/afs.R (line 83, column 18)
R/afs.R (line 84, column 15)
R/nvariant.R (line 58, column 17)
R/nvariant.R (line 59, column 19)
R/nvariant.R (line 62, column 17)
R/nvariant.R (line 63, column 19)
R/nvariant.R (line 66, column 17)
R/nvariant.R (line 67, column 19)
R/nvariant.R (line 70, column 17)
R/nvariant.R (line 71, column 19)
* NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
Found in files:
R/afs.R (line 41, column 14)
R/afs.R (line 61, column 14)
R/expected_variants.R (line 26, column 14)
R/fit_nvariant.R (line 23, column 14)
R/nvariant.R (line 53, column 14)
* Checking parsed R code in R directory, examples, vignettes...
* NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 3
times)
suppressMessages() in R/fit_afs.R (line 83, column 10)
suppressMessages() in R/fit_nvariant.R (line 56, column 14)
suppressMessages() in R/fit_nvariant.R (line 68, column 23)
* Checking function lengths...
* NOTE: Recommended function length <= 50 lines.
There are 4 functions > 50 lines.
The longest 5 functions are:
afs() (R/afs.R, line 31): 79 lines
fit_afs() (R/fit_afs.R, line 21): 73 lines
fit_nvariant() (R/fit_nvariant.R, line 18): 64 lines
nvariant() (R/nvariant.R, line 27): 54 lines
expected_variants() (R/expected_variants.R, line 21): 25 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 142 lines (16%) are > 80 characters
long.
First 6 lines:
R/afs.R:3 #' The afs function calculates the proportion of variants in ...
R/afs.R:5 #' @details The default parameters will be used if an ancestr...
R/afs.R:7 #' Alpha, beta, and b can be estimated from target data using...
R/afs.R:8 #' The MAC bins should be exhaustive, non-overlapping bins of...
R/afs.R:10 #' @param alpha AFS function parameter alpha, does not need ...
R/afs.R:12 #' @param beta AFS function parameter beta, does not need to...
* NOTE: Consider multiples of 4 spaces for line indents, 23
lines(3%) are not.
First 6 lines:
R/expected_variants.R:30 | colnames(mac_bin_prop)[3] != 'Prop'){
R/fit_nvariant.R:70 contro...
R/nvariant.R:47 pop == 'SAS')){
man/afs.Rd:33 data('afs_afr')
man/afs.Rd:34 mac <- afs_afr[,c(1:2)]
man/afs.Rd:35 afs(mac_bins = mac, pop = 'AFR')
See http://bioconductor.org/developers/how-to/coding-style/
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
* ERROR: Maintainer must subscribe to the bioc-devel mailing list.
Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
Summary:
ERROR count: 1
WARNING count: 0
NOTE count: 9
For detailed information about these checks, see the BiocCheck
vignette, available at
https://bioconductor.org/packages/3.15/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
BiocCheck FAILED.
nebbiolo1 BUILD BIN output
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merida1 Summary
[top]
Package: RAREsim |
Version: 0.99.0 |
RVersion: 4.2
|
BiocVersion: 3.15
|
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RAREsim |
BuildTime: 0 minutes 22.19 seconds |
CheckCommand: BiocCheckGitClone('RAREsim') && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RAREsim_0.99.0.tar.gz && BiocCheck('RAREsim_0.99.0.tar.gz', `new-package`=TRUE) |
CheckTime: 1 minutes 27.71 seconds |
BuildBinCommand: /Users/biocbuild/BBS/utils/build-universal.sh RAREsim_0.99.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R libdir |
BuildBinTime: 0 minutes 6.96 seconds |
PackageFileSize: 288.49 KiB |
BuildID:: RAREsim_20220325131523 |
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: RAREsim. Starting Build package. Starting Check package. Starting Build package. |
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 0. Checking Package status: 1. Build Package status: 0. |
merida1 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘RAREsim/DESCRIPTION’ ... OK
* preparing ‘RAREsim’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘RAREsim_0.99.0.tar.gz’
merida1 CHECK output
[top]
===============================
BiocCheckGitClone('RAREsim')
===============================
This is BiocCheckGitClone version 1.31.36. BiocCheckGitClone is a work
in progress. Output and severity of issues may change.
* Checking valid files...
* ERROR: System Files found that should not be git
tracked:.DS_Store
* ERROR: System Files found that should not be git
tracked:.Rhistory
* ERROR: System Files found that should not be git
tracked:data/.DS_Store
* ERROR: System Files found that should not be git
tracked:data/.Rhistory
* ERROR: System Files found that should not be git
tracked:R/.DS_Store
* ERROR: System Files found that should not be git
tracked:R/.Rapp.history
* ERROR: System Files found that should not be git
tracked:vignettes/.DS_Store
.DS_Store
.Rhistory
data/.DS_Store
data/.Rhistory
R/.DS_Store
R/.Rapp.history
vignettes/.DS_Store
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
Summary:
ERROR count: 7
WARNING count: 0
NOTE count: 0
For detailed information about these checks, see the BiocCheck
vignette, available at
https://bioconductor.org/packages/3.15/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
BiocCheckGitClone FAILED.
===============================
R CMD CHECK
===============================
* using log directory ‘/Users/pkgbuild/packagebuilder/workers/jobs/2571/RAREsim_20220325131523/RAREsim.Rcheck’
* using R Under development (unstable) (2022-03-17 r81925)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RAREsim/DESCRIPTION’ ... OK
* this is package ‘RAREsim’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RAREsim’ can be installed ... [4s/7s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/9s] OK
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [1s/3s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [2s/4s]
[2s/5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
===============================
BiocCheck('RAREsim_0.99.0.tar.gz')
===============================
This is BiocCheck version 1.31.36. BiocCheck is a work in progress.
Output and severity of issues may change. Installing package...
* Checking Package Dependencies...
Warning in system2(cmd, args, stdout = TRUE, stderr = FALSE, env = "R_DEFAULT_PACKAGES=NULL") :
running command 'R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' -q --vanilla --slave -f /Library/Frameworks/R.framework/Versions/4.2/Resources/library/BiocCheck/script/checkBadDeps.R --args "/Users/pkgbuild/packagebuilder/workers/jobs/2571/RAREsim_20220325131523/RAREsim_0.99.0.tar.gz" "/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//Rtmpjemwf7/file500d52e3e4cb/lib" 2>/dev/null' had status 1
* Checking if other packages can import this one...
* Checking to see if we understand object initialization...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R Version dependency...
* NOTE: Update R version dependency from 4.1.0 to 4.2.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking vignette directory...
* NOTE: 'sessionInfo' not found in vignette(s)
Missing from file(s):
vignettes/RAREsim_Vignette.Rmd
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of RAREsim...
* Checking coding practice...
* NOTE: Avoid 1:...; use seq_len() or seq_along()
Found in files:
afs.R (line 93, column 14)
afs.R (line 102, column 14)
fit_afs.R (line 59, column 11)
fit_afs.R (line 71, column 18)
* NOTE: Avoid using '=' for assignment and use '<-' instead
Found in files:
R/afs.R (line 67, column 19)
R/afs.R (line 68, column 18)
R/afs.R (line 69, column 15)
R/afs.R (line 72, column 19)
R/afs.R (line 73, column 18)
R/afs.R (line 74, column 15)
R/afs.R (line 77, column 20)
R/afs.R (line 78, column 19)
R/afs.R (line 79, column 15)
R/afs.R (line 82, column 19)
R/afs.R (line 83, column 18)
R/afs.R (line 84, column 15)
R/nvariant.R (line 58, column 17)
R/nvariant.R (line 59, column 19)
R/nvariant.R (line 62, column 17)
R/nvariant.R (line 63, column 19)
R/nvariant.R (line 66, column 17)
R/nvariant.R (line 67, column 19)
R/nvariant.R (line 70, column 17)
R/nvariant.R (line 71, column 19)
* NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
Found in files:
R/afs.R (line 41, column 14)
R/afs.R (line 61, column 14)
R/expected_variants.R (line 26, column 14)
R/fit_nvariant.R (line 23, column 14)
R/nvariant.R (line 53, column 14)
* Checking parsed R code in R directory, examples, vignettes...
* NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 3
times)
suppressMessages() in R/fit_afs.R (line 83, column 10)
suppressMessages() in R/fit_nvariant.R (line 56, column 14)
suppressMessages() in R/fit_nvariant.R (line 68, column 23)
* Checking function lengths...
* NOTE: Recommended function length <= 50 lines.
There are 4 functions > 50 lines.
The longest 5 functions are:
afs() (R/afs.R, line 31): 79 lines
fit_afs() (R/fit_afs.R, line 21): 73 lines
fit_nvariant() (R/fit_nvariant.R, line 18): 64 lines
nvariant() (R/nvariant.R, line 27): 54 lines
expected_variants() (R/expected_variants.R, line 21): 25 lines
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 142 lines (16%) are > 80 characters
long.
First 6 lines:
R/afs.R:3 #' The afs function calculates the proportion of variants in ...
R/afs.R:5 #' @details The default parameters will be used if an ancestr...
R/afs.R:7 #' Alpha, beta, and b can be estimated from target data using...
R/afs.R:8 #' The MAC bins should be exhaustive, non-overlapping bins of...
R/afs.R:10 #' @param alpha AFS function parameter alpha, does not need ...
R/afs.R:12 #' @param beta AFS function parameter beta, does not need to...
* NOTE: Consider multiples of 4 spaces for line indents, 23
lines(3%) are not.
First 6 lines:
R/expected_variants.R:30 | colnames(mac_bin_prop)[3] != 'Prop'){
R/fit_nvariant.R:70 contro...
R/nvariant.R:47 pop == 'SAS')){
man/afs.Rd:33 data('afs_afr')
man/afs.Rd:34 mac <- afs_afr[,c(1:2)]
man/afs.Rd:35 afs(mac_bins = mac, pop = 'AFR')
See http://bioconductor.org/developers/how-to/coding-style/
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
* ERROR: Maintainer must subscribe to the bioc-devel mailing list.
Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
Summary:
ERROR count: 1
WARNING count: 0
NOTE count: 9
For detailed information about these checks, see the BiocCheck
vignette, available at
https://bioconductor.org/packages/3.15/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
BiocCheck FAILED.
merida1 BUILD BIN output
[top]
===============================
R CMD BUILD
===============================
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=libdir RAREsim_0.99.0.tar.gz'
>>>>>>>
* installing *source* package ‘RAREsim’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RAREsim)