merida1 Summary
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| Package: GenomicInteractionHub |
| Version: 0.99.5 |
| RVersion: 4.2
|
| BiocVersion: 3.15
|
| BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicInteractionHub |
| BuildTime: 0 minutes 0.35 seconds |
| CheckCommand: |
| CheckTime: |
| BuildBinCommand: |
| BuildBinTime: |
| PackageFileSize: -1.00 KiB |
| BuildID:: GenomicInteractionHub_20220325190453 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GenomicInteractionHub. Starting Build package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1. |
merida1 BUILD SRC output
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===============================
R CMD BUILD
===============================
* checking for file ‘GenomicInteractionHub/DESCRIPTION’ ... OK
* preparing ‘GenomicInteractionHub’:
* checking DESCRIPTION meta-information ... OK
Error in loadVignetteBuilder(pkgdir, TRUE) :
vignette builder 'knitr' not found
Execution halted
merida1 CHECK output
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merida1 BUILD BIN output
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nebbiolo1 Summary
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| Package: GenomicInteractionHub |
| Version: 0.99.5 |
| RVersion: 4.2
|
| BiocVersion: 3.15
|
| BuildCommand: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicInteractionHub |
| BuildTime: 1 minutes 13.93 seconds |
| CheckCommand: BiocCheckGitClone('GenomicInteractionHub') && /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --no-vignettes --timings GenomicInteractionHub_0.99.5.tar.gz && BiocCheck('GenomicInteractionHub_0.99.5.tar.gz', `new-package`=TRUE) |
| CheckTime: 0 minutes 22.94 seconds |
| BuildBinCommand: |
| BuildBinTime: |
| PackageFileSize: 247.88 KiB |
| BuildID:: GenomicInteractionHub_20220325190453 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GenomicInteractionHub. Starting Build package. Starting Check package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Checking Package status: 1. |
nebbiolo1 BUILD SRC output
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===============================
R CMD BUILD
===============================
* checking for file ‘GenomicInteractionHub/DESCRIPTION’ ... OK
* preparing ‘GenomicInteractionHub’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘GenomicInteractionHub_0.99.5.tar.gz’
nebbiolo1 CHECK output
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BiocCheckGitClone('GenomicInteractionHub')
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This is BiocCheckGitClone version 1.31.36. BiocCheckGitClone is a work
in progress. Output and severity of issues may change.
* Checking valid files...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
Summary:
ERROR count: 0
WARNING count: 0
NOTE count: 0
For detailed information about these checks, see the BiocCheck
vignette, available at
https://bioconductor.org/packages/3.15/bioc/vignettes/BiocCheck/inst/doc/BiocCheck.html#interpreting-bioccheck-output
===============================
R CMD CHECK
===============================
* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/2561/e421c27423115306ea17902c7c79a6793d05d5cf/GenomicInteractionHub.Rcheck’
* using R Under development (unstable) (2022-03-17 r81925)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GenomicInteractionHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GenomicInteractionHub’ version ‘0.99.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GenomicInteractionHub’ can be installed ... [18s/18s] ERROR
Installation failed.
See ‘/home/pkgbuild/packagebuilder/workers/jobs/2561/e421c27423115306ea17902c7c79a6793d05d5cf/GenomicInteractionHub.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/home/pkgbuild/packagebuilder/workers/jobs/2561/e421c27423115306ea17902c7c79a6793d05d5cf/GenomicInteractionHub.Rcheck/00check.log’
for details.
===============================
BiocCheck('GenomicInteractionHub_0.99.5.tar.gz')
===============================
Error: package or namespace load failed for ‘BiocCheck’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called ‘Biobase’
Execution halted
nebbiolo1 BUILD BIN output
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