Bioconductor Single Package Builder - Build History

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 R CMD BUILD

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* checking for file ‘clevRvis/DESCRIPTION’ ... OK
* preparing ‘clevRvis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* saving partial Rd database
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘clevRvis_0.99.1.tar.gz’

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 BiocCheckGitClone('clevRvis')

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─ BiocCheckVersion: 1.35.8
─ BiocVersion: 3.17
─ Package: clevRvis
─ PackageVersion: 0.99.1
─ sourceDir: /Users/pkgbuild/packagebuilder/workers/jobs/2860/clevRvis_20221219172716/clevRvis
─ platform: unix
─ isTarBall: FALSE

* Checking valid files...
    * ERROR: System files found that should not be Git tracked.
      clevRvis.Rproj
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...

─ BiocCheck results ──
1 ERRORS | 0 WARNINGS | 0 NOTES

For more details, run
    browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

===============================

* using log directory ‘/Users/pkgbuild/packagebuilder/workers/jobs/2860/clevRvis_20221219172716/clevRvis.Rcheck’
* using R Under development (unstable) (2022-12-10 r83428)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘clevRvis/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘clevRvis’ version ‘0.99.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘clevRvis’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... NOTE
File
  LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/19s] NOTE
.basicSharkPlot: no visible binding for global variable ‘x’
.basicSharkPlot: no visible binding for global variable ‘y’
Undefined global functions or variables:
  x y
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [3s/3s] ERROR
Running examples in ‘clevRvis-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: clevRvis_package
> ### Title: Visualization Techniques for Clonal Evolution
> ### Aliases: clevRvis_package clevRvis
> 
> ### ** Examples
> 
> timepoints <- c(0,50,100)
> parents <- c(0,1,1,3,0,5,6)
> fracTable <- matrix(
+                     c(  20, 10,  0,  0,  0,  0,  0,
+                         40, 20, 15,  0, 30, 10,  0,
+                         50, 25, 15, 10, 40, 20, 15),
+                     ncol = length(timepoints))
> 
> #Generating a seaObject with timepoint estimation
> seaObject <- createSeaObject(fracTable, parents, timepoints)
> 
> 
> #Basic shark plot showing legend and title
> #png('basicShark.png',height = 800, width=600)
> sharkPlot(seaObject, showLegend = TRUE, main = 'Example Shark plot')
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)) :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call(C_textBounds, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Warning in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  :
  font family 'Arial Narrow' not found in PostScript font database
Error in grid.Call.graphics(C_text, as.graphicsAnnot(x$label), x$x, x$y,  : 
  invalid font type
Calls: <Anonymous> ... drawDetails -> drawDetails.text -> grid.Call.graphics
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [6s/10s] OK
* DONE

Status: 1 ERROR, 2 NOTEs
See
  ‘/Users/pkgbuild/packagebuilder/workers/jobs/2860/clevRvis_20221219172716/clevRvis.Rcheck/00check.log’
for details.





===============================

 BiocCheck('clevRvis_0.99.1.tar.gz')

===============================

─ BiocCheckVersion: 1.35.8
─ BiocVersion: 3.17
─ Package: clevRvis
─ PackageVersion: 0.99.1
─ sourceDir: /var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//RtmpXljgLu/file1526a61d580f1/clevRvis
─ installDir: /var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//RtmpXljgLu/file1526a5f896aff
─ BiocCheckDir: /Users/pkgbuild/packagebuilder/workers/jobs/2860/clevRvis_20221219172716/clevRvis.BiocCheck
─ platform: unix
─ isTarBall: TRUE

* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
    * NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R'
      with 'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of clevRvis...
* Checking coding practice...
    * NOTE: Avoid the use of 'paste' in condition signals
    * NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
* Checking parsed R code in R directory, examples, vignettes...
    * NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 2
      times)
* Checking function lengths...
    * NOTE: The recommended function length is 50 lines or less. There
      are 53 functions greater than 50 lines.
* Checking man page documentation...
    * NOTE: Consider adding runnable examples to man pages that
      document exported objects.
    * NOTE: Usage of dontrun{} / donttest{} tags found in man page
      examples. 11% of man pages use at least one of these tags.
* Checking package NEWS...
    * NOTE: Consider adding a NEWS file, so your package news will be
      included in Bioconductor release announcements.
* Checking unit tests...
    * NOTE: Consider adding unit tests. We strongly encourage them. See
      https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 140 lines (3%) are > 80 characters
      long.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
    * NOTE: Cannot determine whether maintainer is subscribed to the
      Bioc-Devel mailing list (requires admin credentials). Subscribe
      here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
    Maintainer is registered at support site.
    Package name is in support site watched tags.

─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 11 NOTES

See the clevRvis.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.

===============================

 R CMD BUILD

===============================

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=libdir clevRvis_0.99.1.tar.gz'
>>>>>>> 

* installing *source* package ‘clevRvis’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (clevRvis)