Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/MarZIC
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 22.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  
merida1 macOS 10.14.6 Mojave/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: MarZIC
Version: 0.99.3
RVersion: 4.3
BiocVersion: 3.17
BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MarZIC
BuildTime: 0 minutes 3.09 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: MarZIC_20230111152247
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: MarZIC. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 1. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘MarZIC/DESCRIPTION’ ... OK
* preparing ‘MarZIC’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
      -----------------------------------
* installing *source* package ‘MarZIC’ ...
** using staged installation
** libs
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2  -Wall -c Q_theta_cpp_include_nz.cpp -o Q_theta_cpp_include_nz.o
Q_theta_cpp_include_nz.cpp: In function ‘Rcpp::NumericVector test_inf(Rcpp::NumericVector, Rcpp::NumericVector)’:
Q_theta_cpp_include_nz.cpp:43:41: error: no match for ‘operator&’ (operand types are ‘Rcpp::sugar::IsInfinite<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >’ and ‘Rcpp::sugar::Vectorized<fabs, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >’)
   43 |   LogicalVector ind_vec=(is_infinite(x) & abs(tau))<1e-8;
      |                          ~~~~~~~~~~~~~~ ^ ~~~~~~~~
      |                                     |        |
      |                                     |        Rcpp::sugar::Vectorized<fabs, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >
      |                                     Rcpp::sugar::IsInfinite<14, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >
In file included from /home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/sugar/logical/logical.h:29,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/sugar/sugar_forward.h:29,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/RcppCommon.h:184,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp.h:27,
                 from Q_theta_cpp_include_nz.cpp:1:
/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/sugar/logical/and.h:316:1: note: candidate: ‘template<bool LHS_NA, class LHS_T, bool RHS_NA, class RHS_T> Rcpp::sugar::And_LogicalExpression_LogicalExpression<LHS_NA, LHS_T, RHS_NA, RHS_T> operator&(const Rcpp::VectorBase<10, LHS_NA, LHS_T>&, const Rcpp::VectorBase<10, RHS_NA, RHS_T>&)’
  316 | operator&(
      | ^~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include/Rcpp/sugar/logical/and.h:316:1: note:   template argument deduction/substitution failed:
Q_theta_cpp_include_nz.cpp:43:50: note:   template argument ‘14’ does not match ‘10’
   43 |   LogicalVector ind_vec=(is_infinite(x) & abs(tau))<1e-8;
      |                                                  ^
Q_theta_cpp_include_nz.cpp:43:50: note:   ‘Rcpp::sugar::Vectorized<fabs, true, Rcpp::Vector<14, Rcpp::PreserveStorage> >’ is not derived from ‘const Rcpp::VectorBase<10, RHS_NA, RHS_T>’
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:183: Q_theta_cpp_include_nz.o] Error 1
ERROR: compilation failed for package ‘MarZIC’
* removing ‘/tmp/Rtmp6dOuvR/Rinst8dc3535ae2007/MarZIC’
      -----------------------------------
ERROR: package installation failed

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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merida1 Summary
 
                			
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Package: MarZIC
 
                					
Version: 0.99.3
 
                					
RVersion: 4.3
                
 
                					
BiocVersion: 3.17
                
 

                					
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MarZIC
 
                					
BuildTime: 0 minutes 3.75 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: MarZIC_20230111152247
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: MarZIC. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 1. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
merida1 BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘MarZIC/DESCRIPTION’ ... OK
* preparing ‘MarZIC’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
      -----------------------------------
* installing *source* package ‘MarZIC’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.3/Resources/library/RcppArmadillo/include' -I/usr/local/include    -fPIC  -Wall -g -O2  -c Q_theta_cpp_include_nz.cpp -o Q_theta_cpp_include_nz.o
Q_theta_cpp_include_nz.cpp:43:41: error: invalid operands to binary expression ('sugar::IsInfinite<14, true, Vector<14, PreserveStorage> >' and 'sugar::Vectorized< ::fabs, true, Vector<14, PreserveStorage> >')
  LogicalVector ind_vec=(is_infinite(x) & abs(tau))<1e-8;
                         ~~~~~~~~~~~~~~ ^ ~~~~~~~~
/Library/Frameworks/R.framework/Versions/4.3/Resources/library/Rcpp/include/Rcpp/sugar/logical/and.h:316:1: note: candidate template ignored: could not match 'VectorBase' against 'Vectorized'
operator&(
^
1 error generated.
make: *** [Q_theta_cpp_include_nz.o] Error 1
ERROR: compilation failed for package ‘MarZIC’
* removing ‘/private/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T/Rtmpm9W0G3/Rinst13dca77e6c771/MarZIC’
      -----------------------------------
ERROR: package installation failed


                				
 

                			
 
                			    
                				
merida1 CHECK output
 
                    			
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merida1 BUILD BIN output
 
                    			
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