merida1 Summary
[top]
| Package: HiCool |
| Version: 0.99.0 |
| RVersion: 4.3
|
| BiocVersion: 3.17
|
| BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool |
| BuildTime: 0 minutes 0.69 seconds |
| CheckCommand: BiocCheckGitClone('HiCool') && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --library=/Users/pkgbuild/packagebuilder/workers/jobs/2879/R-libs --install=check:/Users/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.install-out.txt HiCool_0.99.0.tar.gz && BiocCheck('HiCool_0.99.0.tar.gz', `new-package`=TRUE) |
| CheckTime: 10 minutes 3.06 seconds |
| BuildBinCommand: /Users/biocbuild/BBS/utils/build-universal.sh HiCool_0.99.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R libdir |
| BuildBinTime: 0 minutes 46.66 seconds |
| PackageFileSize: 481.31 KiB |
| BuildID:: HiCool_20230130130439 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: HiCool. Starting Build package. Starting Check package. Starting Build package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Checking Package status: 1. Build Package status: 0. |
merida1 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘HiCool_0.99.0.tar.gz’
merida1 CHECK output
[top]
===============================
BiocCheckGitClone('HiCool')
===============================
─ BiocCheckVersion: 1.35.9
─ BiocVersion: 3.17
─ Package: HiCool
─ PackageVersion: 0.99.0
─ sourceDir: /Users/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/Users/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.Rcheck’
* using R Under development (unstable) (2023-01-10 r83596)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* R was compiled by
Apple clang version 12.0.0 (clang-1200.0.32.29)
GNU Fortran (GCC) 8.2.0
* running under: macOS Mojave 10.14.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* this is package ‘HiCool’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCool’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/Users/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [9s/9s] OK
* checking whether the package can be loaded with stated dependencies ... [9s/9s] OK
* checking whether the package can be unloaded cleanly ... [9s/9s] OK
* checking whether the namespace can be loaded with stated dependencies ... [9s/9s] OK
* checking whether the namespace can be unloaded cleanly ... [9s/9s] OK
* checking loading without being on the library search path ... [9s/10s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [30s/30s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking examples ... [49s/53s] ERROR
Running examples in ‘HiCool-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: HiCReport
> ### Title: HiC processing report
> ### Aliases: HiCReport HiCReports
>
> ### ** Examples
>
> mcool_path <- HiContactsData::HiContactsData('yeast_wt', 'mcool')
snapshotDate(): 2023-01-20
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
> pairs_path <- HiContactsData::HiContactsData('yeast_wt', 'pairs.gz')
snapshotDate(): 2023-01-20
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
> log_path <- HiContactsData::HiContactsData(sample = 'yeast_wt', format = 'HiCool_log')
snapshotDate(): 2023-01-20
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
downloading 1 resources
retrieving 1 resource
loading from cache
> cf <- CoolFile(mcool_path, pairs = pairs_path, metadata = list(log = log_path))
> HiCReport(cf)
Quitting from lines 192-239 (d369332250d6_7752.Rmd)
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'pairsFile' for signature '"HiCExperiment"'
Calls: HiCReport ... withCallingHandlers -> <Anonymous> -> pairsFile -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [330s/357s]
[330s/357s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 20 lines of output:
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 3 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-HiCReport.R:7'): Check that reports work ─────────────────────
Expected `HiCReport(cf)` to run without any errors.
i Actually got a <simpleError>:
Error:
! unable to find an inherited method for function 'pairsFile' for signature '"HiCExperiment"'
── Error ('test-HiCool.R:16'): Check that HiCool works with fasta or AWS S3 iGenomes ──
Error in `setupBasiliskEnv(envpath, packages = .getPackages(env), channels = .getChannels(env),
pip = .getPipPackages(env), paths = file.path(getSystemDir(pkgname,
installed = TRUE), .getPipPaths(env)))`: failed to install additional packages via pip
Backtrace:
▆
1. └─HiCool::HiCool(r1, r2, "R64-1-1", output = "./HiCool/") at test-HiCool.R:16:4
2. └─basilisk::basiliskStart(env_HiCool)
3. └─basilisk::obtainEnvironmentPath(env)
4. └─basilisk::setupBasiliskEnv(...)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 3 ]
Error: Test failures
Execution halted
* checking PDF version of manual ... [5s/5s] OK
* DONE
Status: 2 ERRORs, 2 NOTEs
See
‘/Users/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.Rcheck/00check.log’
for details.
WARNING: R CMD check exceeded 10 min requirement
===============================
BiocCheck('HiCool_0.99.0.tar.gz')
===============================
─ BiocCheckVersion: 1.35.9
─ BiocVersion: 3.17
─ Package: HiCool
─ PackageVersion: 0.99.0
─ sourceDir: /var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//Rtmpj5KBdR/file116c271a7e079/HiCool
─ installDir: /var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//Rtmpj5KBdR/file116c24bfef0f9
─ BiocCheckDir: /Users/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* NOTE: Update R version dependency from 4.2 to 4.3.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* NOTE: Consider adding these automatically suggested biocViews:
Normalization
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R'
with 'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* ERROR: No 'vignettes' directory.
* Checking whether vignette is built with 'R CMD build'...
* ERROR: Vignette must be built by 'R CMD build'. Please see the
`Vignette Checks` section of the BiocCheck vignette.
* Checking package installation calls in R code...
* Checking for library/require of HiCool...
* Checking coding practice...
* NOTE: Avoid 'cat' and 'print' outside of 'show' methods
* NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
are 13 functions greater than 50 lines.
* Checking man page documentation...
* WARNING: Add non-empty \value sections to the following man
pages:
* Checking package NEWS...
* NOTE: Consider adding a NEWS file, so your package news will be
included in Bioconductor release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 64 lines (6%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 25 lines
(2%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
2 ERRORS | 1 WARNINGS | 9 NOTES
See the HiCool.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
merida1 BUILD BIN output
[top]
===============================
R CMD BUILD
===============================
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=libdir HiCool_0.99.0.tar.gz'
>>>>>>>
* installing *source* package ‘HiCool’ ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded
* DONE (HiCool)
nebbiolo1 Summary
[top]
| Package: HiCool |
| Version: 0.99.0 |
| RVersion: 4.3
|
| BiocVersion: 3.17
|
| BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiCool |
| BuildTime: 0 minutes 0.33 seconds |
| CheckCommand: BiocCheckGitClone('HiCool') && /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/2879/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.install-out.txt HiCool_0.99.0.tar.gz && BiocCheck('HiCool_0.99.0.tar.gz', `new-package`=TRUE) |
| CheckTime: 8 minutes 22.66 seconds |
| BuildBinCommand: |
| BuildBinTime: |
| PackageFileSize: 481.30 KiB |
| BuildID:: HiCool_20230130130439 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: HiCool. Starting Build package. Starting Check package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Checking Package status: 1. |
nebbiolo1 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* preparing ‘HiCool’:
* checking DESCRIPTION meta-information ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
Omitted ‘LazyData’ from DESCRIPTION
* building ‘HiCool_0.99.0.tar.gz’
nebbiolo1 CHECK output
[top]
===============================
BiocCheckGitClone('HiCool')
===============================
─ BiocCheckVersion: 1.35.9
─ BiocVersion: 3.17
─ Package: HiCool
─ PackageVersion: 0.99.0
─ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.Rcheck’
* using R Under development (unstable) (2023-01-10 r83596)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCool/DESCRIPTION’ ... OK
* this is package ‘HiCool’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCool’ can be installed ... NOTE
Found the following notes/warnings:
Non-staged installation was used
See ‘/home/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.Rcheck/00install.out’ for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [8s/8s] OK
* checking whether the package can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the package can be unloaded cleanly ... [7s/7s] OK
* checking whether the namespace can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/7s] OK
* checking loading without being on the library search path ... [7s/7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/24s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking examples ... [30s/32s] ERROR
Running examples in ‘HiCool-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: HiCReport
> ### Title: HiC processing report
> ### Aliases: HiCReport HiCReports
>
> ### ** Examples
>
> mcool_path <- HiContactsData::HiContactsData('yeast_wt', 'mcool')
snapshotDate(): 2023-01-20
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
> pairs_path <- HiContactsData::HiContactsData('yeast_wt', 'pairs.gz')
snapshotDate(): 2023-01-20
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
loading from cache
> log_path <- HiContactsData::HiContactsData(sample = 'yeast_wt', format = 'HiCool_log')
snapshotDate(): 2023-01-20
see ?HiContactsData and browseVignettes('HiContactsData') for documentation
downloading 1 resources
retrieving 1 resource
loading from cache
> cf <- CoolFile(mcool_path, pairs = pairs_path, metadata = list(log = log_path))
> HiCReport(cf)
Quitting from lines 192-239 (1de48f1f4e946b_7752.Rmd)
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'pairsFile' for signature '"HiCExperiment"'
Calls: HiCReport ... withCallingHandlers -> <Anonymous> -> pairsFile -> <Anonymous>
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [299s/322s]
[299s/322s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 20 lines of output:
i Actually got a <simpleError>:
Error:
! unable to find an inherited method for function 'pairsFile' for signature '"HiCExperiment"'
── Error ('test-HiCool.R:16'): Check that HiCool works with fasta or AWS S3 iGenomes ──
<Rcpp::exception/C++Error/error/condition>
Error: FileNotFoundError: [Errno 2] could not open alignment file `/tmp/RtmpeLt9Wb/9CR1CY/tmp/7a6ead23/temp_alignment.bam`: No such file or directory
Backtrace:
▆
1. └─HiCool::HiCool(r1, r2, "R64-1-1", output = "./HiCool/") at test-HiCool.R:16:4
2. └─basilisk::basiliskRun(...)
3. └─HiCool (local) fun(...)
4. ├─base::write(...)
5. │ └─base::cat(...)
6. ├─reticulate::py_capture_output(...)
7. │ └─base::force(expr)
8. └─hs$pipeline$full_pipeline(...)
9. └─reticulate:::py_call_impl(callable, dots$args, dots$keywords)
[ FAIL 2 | WARN 1 | SKIP 0 | PASS 3 ]
Error: Test failures
Execution halted
* checking PDF version of manual ... [2s/2s] OK
* DONE
Status: 2 ERRORs, 2 NOTEs
See
‘/home/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.Rcheck/00check.log’
for details.
===============================
BiocCheck('HiCool_0.99.0.tar.gz')
===============================
─ BiocCheckVersion: 1.35.9
─ BiocVersion: 3.17
─ Package: HiCool
─ PackageVersion: 0.99.0
─ sourceDir: /tmp/RtmpREvKYJ/file311a0643ea1bc5/HiCool
─ installDir: /tmp/RtmpREvKYJ/file311a065f75e558
─ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/2879/HiCool_20230130130439/HiCool.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* NOTE: Update R version dependency from 4.2 to 4.3.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* NOTE: Consider adding these automatically suggested biocViews:
Normalization
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R'
with 'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* ERROR: No 'vignettes' directory.
* Checking whether vignette is built with 'R CMD build'...
* ERROR: Vignette must be built by 'R CMD build'. Please see the
`Vignette Checks` section of the BiocCheck vignette.
* Checking package installation calls in R code...
* Checking for library/require of HiCool...
* Checking coding practice...
* NOTE: Avoid 'cat' and 'print' outside of 'show' methods
* NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
are 13 functions greater than 50 lines.
* Checking man page documentation...
* WARNING: Add non-empty \value sections to the following man
pages:
* Checking package NEWS...
* NOTE: Consider adding a NEWS file, so your package news will be
included in Bioconductor release announcements.
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 64 lines (6%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 25 lines
(2%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
2 ERRORS | 1 WARNINGS | 9 NOTES
See the HiCool.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
nebbiolo1 BUILD BIN output
[top]