Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/alabaster.vcf

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
merida1	macOS 10.14.6 Mojave/x86_64	ERROR	skipped	skipped	skipped
nebbiolo1	Linux (Ubuntu 22.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

merida1 Summary

[top]

Package: alabaster.vcf

Version: 0.99.1

RVersion: 4.3

BiocVersion: 3.17

BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.vcf

BuildTime: 0 minutes 4.15 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: alabaster.vcf_20230228200716

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: alabaster.vcf. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 1. Build Package status: 1.

merida1 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘alabaster.vcf/DESCRIPTION’ ... OK
* preparing ‘alabaster.vcf’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘alabaster.vcf’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: package or namespace load failed for ‘alabaster.base’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
 there is no package called ‘Rhdf5lib’
Execution halted
ERROR: lazy loading failed for package ‘alabaster.vcf’
* removing ‘/private/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T/Rtmp5XFERz/Rinst99413b1ad863/alabaster.vcf’
      -----------------------------------
ERROR: package installation failed

merida1 CHECK output

[top]

merida1 BUILD BIN output

[top]

nebbiolo1 Summary

[top]

Package: alabaster.vcf

Version: 0.99.1

RVersion: 4.3

BiocVersion: 3.17

BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data alabaster.vcf

BuildTime: 0 minutes 3.55 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: alabaster.vcf_20230228200716

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: alabaster.vcf. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 1. Build Package status: 1.

nebbiolo1 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘alabaster.vcf/DESCRIPTION’ ... OK
* preparing ‘alabaster.vcf’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘alabaster.vcf’ ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
Error: package ‘SummarizedExperiment’ required by ‘VariantAnnotation’ could not be found
Execution halted
ERROR: lazy loading failed for package ‘alabaster.vcf’
* removing ‘/tmp/RtmpKyWM2B/Rinstb09a424b788b3/alabaster.vcf’
      -----------------------------------
ERROR: package installation failed

nebbiolo1 CHECK output

[top]

nebbiolo1 BUILD BIN output

[top]