nebbiolo1 Summary
[top]
| Package: ClusterFoldSimilarity |
| Version: 0.99.0 |
| RVersion: 4.3
|
| BiocVersion: 3.17
|
| BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ClusterFoldSimilarity |
| BuildTime: 2 minutes 58.56 seconds |
| CheckCommand: BiocCheckGitClone('ClusterFoldSimilarity') && /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/2900/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.install-out.txt ClusterFoldSimilarity_0.99.0.tar.gz && BiocCheck('ClusterFoldSimilarity_0.99.0.tar.gz', `new-package`=TRUE) |
| CheckTime: 2 minutes 46.72 seconds |
| BuildBinCommand: |
| BuildBinTime: |
| PackageFileSize: 748.99 KiB |
| BuildID:: ClusterFoldSimilarity_20230323124052 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: ClusterFoldSimilarity. Starting Build package. Starting Check package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Checking Package status: 1. |
nebbiolo1 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘ClusterFoldSimilarity/DESCRIPTION’ ... OK
* preparing ‘ClusterFoldSimilarity’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘ClusterFoldSimilarity_0.99.0.tar.gz’
nebbiolo1 CHECK output
[top]
===============================
BiocCheckGitClone('ClusterFoldSimilarity')
===============================
─ BiocCheckVersion: 1.35.14
─ BiocVersion: 3.17
─ Package: ClusterFoldSimilarity
─ PackageVersion: 0.99.0
─ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.Rcheck’
* using R Under development (unstable) (2023-03-16 r83996)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.2 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ClusterFoldSimilarity/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ClusterFoldSimilarity’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘ClusterFoldSimilarity’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... NOTE
File
LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
‘data.table’ ‘ggplot2’ ‘igraph’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] NOTE
cluster_fold_similarity: no visible global function definition for ‘is’
cluster_fold_similarity: no visible global function definition for
‘head’
cluster_fold_similarity: no visible global function definition for ‘sd’
cluster_fold_similarity : <anonymous>: no visible global function
definition for ‘head’
plot_clusters_graph: no visible global function definition for ‘par’
plot_clusters_graph: no visible global function definition for ‘legend’
similarity_heatmap: no visible binding for global variable ‘cluster_l’
similarity_heatmap: no visible binding for global variable ‘cluster_r’
similarity_heatmap: no visible binding for global variable
‘similarity_value’
Undefined global functions or variables:
cluster_l cluster_r head is legend par sd similarity_value
Consider adding
importFrom("graphics", "legend", "par")
importFrom("methods", "is")
importFrom("stats", "sd")
importFrom("utils", "head")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'cluster_fold_similarity.Rd':
\examples lines wider than 100 characters:
singlecell.1.seurat <- CreateSeuratObject(counts = counts(mouse.brain.romanov),meta.data = as.data.frame(colData(mouse.brain.romanov)))
singlecell.2.seurat <- CreateSeuratObject(counts = counts(mouse.brain.zei),meta.data = as.data.frame(colData(mouse.brain.zei)))
Rd file 'plot_clusters_graph.Rd':
\examples lines wider than 100 characters:
singlecell.1.seurat <- CreateSeuratObject(counts = counts(mouse.brain.romanov),meta.data = as.data.frame(colData(mouse.brain.romanov)))
singlecell.2.seurat <- CreateSeuratObject(counts = counts(mouse.brain.zei),meta.data = as.data.frame(colData(mouse.brain.zei)))
Rd file 'similarity_heatmap.Rd':
\examples lines wider than 100 characters:
singlecell.1.seurat <- CreateSeuratObject(counts = counts(mouse.brain.romanov),meta.data = as.data.frame(colData(mouse.brain.romanov)))
singlecell.2.seurat <- CreateSeuratObject(counts = counts(mouse.brain.zei),meta.data = as.data.frame(colData(mouse.brain.zei)))
These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'cluster_fold_similarity.Rd':
‘DataFrame-class’
Missing link or links in documentation object 'similarity_heatmap.Rd':
‘DataFrame-class’
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [138s/144s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cluster_fold_similarity 53.352 6.587 62.409
similarity_heatmap 33.617 4.216 39.756
plot_clusters_graph 33.261 4.209 39.135
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [2s/2s] OK
* DONE
Status: 2 WARNINGs, 4 NOTEs
See
‘/home/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.Rcheck/00check.log’
for details.
===============================
BiocCheck('ClusterFoldSimilarity_0.99.0.tar.gz')
===============================
─ BiocCheckVersion: 1.35.14
─ BiocVersion: 3.17
─ Package: ClusterFoldSimilarity
─ PackageVersion: 0.99.0
─ sourceDir: /tmp/RtmpldRcRQ/file23786e468825ee/ClusterFoldSimilarity
─ installDir: /tmp/RtmpldRcRQ/file23786e2476c7df
─ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* NOTE: Consider adding these automatically suggested biocViews:
RNASeq
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of ClusterFoldSimilarity...
* Checking coding practice...
* NOTE: Avoid 'cat' and 'print' outside of 'show' methods
* NOTE: Avoid using '=' for assignment and use '<-' instead
* Checking parsed R code in R directory, examples, vignettes...
Found @ in vignettes/ClusterFoldSimilarity.Rmd
* NOTE: Use accessors; don't access S4 class slots via '@' in
examples/vignettes.
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
is 1 function greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* NOTE: Consider adding a NEWS file, so your package news will be
included in Bioconductor release announcements.
* Checking unit tests...
* NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 210 lines (23%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 209 lines
(23%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
* ERROR: Maintainer must subscribe to the bioc-devel mailing list.
Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
1 ERRORS | 0 WARNINGS | 9 NOTES
See the ClusterFoldSimilarity.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
nebbiolo1 BUILD BIN output
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merida1 Summary
[top]
| Package: ClusterFoldSimilarity |
| Version: 0.99.0 |
| RVersion: 4.3
|
| BiocVersion: 3.17
|
| BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ClusterFoldSimilarity |
| BuildTime: 4 minutes 57.04 seconds |
| CheckCommand: BiocCheckGitClone('ClusterFoldSimilarity') && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --library=/Users/pkgbuild/packagebuilder/workers/jobs/2900/R-libs --install=check:/Users/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.install-out.txt ClusterFoldSimilarity_0.99.0.tar.gz && BiocCheck('ClusterFoldSimilarity_0.99.0.tar.gz', `new-package`=TRUE) |
| CheckTime: 6 minutes 14.91 seconds |
| BuildBinCommand: /Users/biocbuild/BBS/utils/build-universal.sh ClusterFoldSimilarity_0.99.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R libdir |
| BuildBinTime: 0 minutes 4.47 seconds |
| PackageFileSize: 738.98 KiB |
| BuildID:: ClusterFoldSimilarity_20230323124052 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: ClusterFoldSimilarity. Starting Build package. Starting Check package. Starting Build package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Checking Package status: 1. Build Package status: 0. |
merida1 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘ClusterFoldSimilarity/DESCRIPTION’ ... OK
* preparing ‘ClusterFoldSimilarity’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘ClusterFoldSimilarity_0.99.0.tar.gz’
merida1 CHECK output
[top]
===============================
BiocCheckGitClone('ClusterFoldSimilarity')
===============================
─ BiocCheckVersion: 1.35.14
─ BiocVersion: 3.17
─ Package: ClusterFoldSimilarity
─ PackageVersion: 0.99.0
─ sourceDir: /Users/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/Users/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.Rcheck’
* using R Under development (unstable) (2023-03-16 r83985)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* R was compiled by
Apple clang version 12.0.0 (clang-1200.0.32.29)
GNU Fortran (GCC) 8.2.0
* running under: macOS Mojave 10.14.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ClusterFoldSimilarity/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ClusterFoldSimilarity’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘ClusterFoldSimilarity’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... NOTE
File
LICENSE
is not mentioned in the DESCRIPTION file.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
‘data.table’ ‘ggplot2’ ‘igraph’
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/7s] NOTE
cluster_fold_similarity: no visible global function definition for ‘is’
cluster_fold_similarity: no visible global function definition for
‘head’
cluster_fold_similarity: no visible global function definition for ‘sd’
cluster_fold_similarity : <anonymous>: no visible global function
definition for ‘head’
plot_clusters_graph: no visible global function definition for ‘par’
plot_clusters_graph: no visible global function definition for ‘legend’
similarity_heatmap: no visible binding for global variable ‘cluster_l’
similarity_heatmap: no visible binding for global variable ‘cluster_r’
similarity_heatmap: no visible binding for global variable
‘similarity_value’
Undefined global functions or variables:
cluster_l cluster_r head is legend par sd similarity_value
Consider adding
importFrom("graphics", "legend", "par")
importFrom("methods", "is")
importFrom("stats", "sd")
importFrom("utils", "head")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... [1s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'cluster_fold_similarity.Rd':
\examples lines wider than 100 characters:
singlecell.1.seurat <- CreateSeuratObject(counts = counts(mouse.brain.romanov),meta.data = as.data.frame(colData(mouse.brain.romanov)))
singlecell.2.seurat <- CreateSeuratObject(counts = counts(mouse.brain.zei),meta.data = as.data.frame(colData(mouse.brain.zei)))
Rd file 'plot_clusters_graph.Rd':
\examples lines wider than 100 characters:
singlecell.1.seurat <- CreateSeuratObject(counts = counts(mouse.brain.romanov),meta.data = as.data.frame(colData(mouse.brain.romanov)))
singlecell.2.seurat <- CreateSeuratObject(counts = counts(mouse.brain.zei),meta.data = as.data.frame(colData(mouse.brain.zei)))
Rd file 'similarity_heatmap.Rd':
\examples lines wider than 100 characters:
singlecell.1.seurat <- CreateSeuratObject(counts = counts(mouse.brain.romanov),meta.data = as.data.frame(colData(mouse.brain.romanov)))
singlecell.2.seurat <- CreateSeuratObject(counts = counts(mouse.brain.zei),meta.data = as.data.frame(colData(mouse.brain.zei)))
These lines will be truncated in the PDF manual.
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'cluster_fold_similarity.Rd':
‘DataFrame-class’
Missing link or links in documentation object 'similarity_heatmap.Rd':
‘DataFrame-class’
See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [251s/316s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
cluster_fold_similarity 102.579 8.202 130.101
similarity_heatmap 63.931 3.463 102.294
plot_clusters_graph 63.161 3.681 77.221
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [9s/10s] OK
* DONE
Status: 2 WARNINGs, 4 NOTEs
See
‘/Users/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.Rcheck/00check.log’
for details.
===============================
BiocCheck('ClusterFoldSimilarity_0.99.0.tar.gz')
===============================
─ BiocCheckVersion: 1.35.14
─ BiocVersion: 3.17
─ Package: ClusterFoldSimilarity
─ PackageVersion: 0.99.0
─ sourceDir: /var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//RtmpFyM2ap/filea6d54640b053/ClusterFoldSimilarity
─ installDir: /var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T//RtmpFyM2ap/filea6d5697876ad
─ BiocCheckDir: /Users/pkgbuild/packagebuilder/workers/jobs/2900/ClusterFoldSimilarity_20230323124052/ClusterFoldSimilarity.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* NOTE: Consider adding these automatically suggested biocViews:
RNASeq
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of ClusterFoldSimilarity...
* Checking coding practice...
* NOTE: Avoid 'cat' and 'print' outside of 'show' methods
* NOTE: Avoid using '=' for assignment and use '<-' instead
* Checking parsed R code in R directory, examples, vignettes...
Found @ in vignettes/ClusterFoldSimilarity.Rmd
* NOTE: Use accessors; don't access S4 class slots via '@' in
examples/vignettes.
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
is 1 function greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* NOTE: Consider adding a NEWS file, so your package news will be
included in Bioconductor release announcements.
* Checking unit tests...
* NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 210 lines (23%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 209 lines
(23%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
* ERROR: Maintainer must subscribe to the bioc-devel mailing list.
Subscribe here: https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
1 ERRORS | 0 WARNINGS | 9 NOTES
See the ClusterFoldSimilarity.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
merida1 BUILD BIN output
[top]
===============================
R CMD BUILD
===============================
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=libdir ClusterFoldSimilarity_0.99.0.tar.gz'
>>>>>>>
* installing *source* package ‘ClusterFoldSimilarity’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ClusterFoldSimilarity)