Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/dreamlet
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
merida1 macOS 10.14.6 Mojave/x86_64   ERROR     skipped     skipped     skipped  
nebbiolo1 Linux (Ubuntu 22.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

merida1 Summary

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Package: dreamlet
Version: 0.99.2
RVersion: 4.3
BiocVersion: 3.17
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dreamlet
BuildTime: 7 minutes 21.40 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: dreamlet_20230327155909
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: dreamlet. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

merida1 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘dreamlet/DESCRIPTION’ ... OK
* preparing ‘dreamlet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: dreamlet
Warning: replacing previous import ‘SingleCellExperiment::cpm’ by ‘edgeR::cpm’ when loading ‘dreamlet’
Warning: replacing previous import ‘limma::topTable’ by ‘variancePartition::topTable’ when loading ‘dreamlet’
Warning: replacing previous import ‘limma::topTable’ by ‘variancePartition::topTable’ when loading ‘zenith’
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘cell_level_covariates.Rmd’ using rmarkdown
--- finished re-building ‘cell_level_covariates.Rmd’

--- re-building ‘dreamlet.Rmd’ using rmarkdown
Quitting from lines 269-277 (dreamlet.Rmd) 
Error: processing vignette 'dreamlet.Rmd' failed with diagnostics:
dims [product 1] do not match the length of object [0]
--- failed re-building ‘dreamlet.Rmd’

--- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown
--- finished re-building ‘h5ad_on_disk.Rmd’

--- re-building ‘mashr.Rmd’ using rmarkdown
--- finished re-building ‘mashr.Rmd’

SUMMARY: processing the following file failed:
  ‘dreamlet.Rmd’

Error: Vignette re-building failed.
Execution halted

merida1 CHECK output

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merida1 BUILD BIN output
 
                    			
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nebbiolo1 Summary
 
                			
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Package: dreamlet
 
                					
Version: 0.99.2
 
                					
RVersion: 4.3
                
 
                					
BiocVersion: 3.17
                
 

                					
BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data dreamlet
 
                					
BuildTime: 6 minutes 53.32 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: dreamlet_20230327155909
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: dreamlet. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
nebbiolo1 BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘dreamlet/DESCRIPTION’ ... OK
* preparing ‘dreamlet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: dreamlet
Warning: replacing previous import ‘SingleCellExperiment::cpm’ by ‘edgeR::cpm’ when loading ‘dreamlet’
Warning: replacing previous import ‘limma::topTable’ by ‘variancePartition::topTable’ when loading ‘dreamlet’
Warning: replacing previous import ‘limma::topTable’ by ‘variancePartition::topTable’ when loading ‘zenith’
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘cell_level_covariates.Rmd’ using rmarkdown
--- finished re-building ‘cell_level_covariates.Rmd’

--- re-building ‘dreamlet.Rmd’ using rmarkdown
Quitting from lines 269-277 (dreamlet.Rmd) 
Error: processing vignette 'dreamlet.Rmd' failed with diagnostics:
dims [product 1] do not match the length of object [0]
--- failed re-building ‘dreamlet.Rmd’

--- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown
--- finished re-building ‘h5ad_on_disk.Rmd’

--- re-building ‘mashr.Rmd’ using rmarkdown
--- finished re-building ‘mashr.Rmd’

SUMMARY: processing the following file failed:
  ‘dreamlet.Rmd’

Error: Vignette re-building failed.
Execution halted


                				
 

                			
 
                			    
                				
nebbiolo1 CHECK output
 
                    			
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nebbiolo1 BUILD BIN output
 
                    			
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