Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/cfTools
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
merida1 macOS 10.14.6 Mojave/x86_64   ERROR     skipped     skipped     skipped  
nebbiolo1 Linux (Ubuntu 22.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

merida1 Summary

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Package: cfTools
Version: 0.99.0
RVersion: 4.3
BiocVersion: 3.17
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cfTools
BuildTime: 0 minutes 53.80 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: cfTools_20230331122740
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: cfTools. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

merida1 BUILD SRC output

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 R CMD BUILD

===============================

* checking for file ‘cfTools/DESCRIPTION’ ... OK
* preparing ‘cfTools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cfTools-vignette.Rmd’ using rmarkdown
Traceback (most recent call last):
  File "/private/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T/RtmpXbhln5/Rinst980361bd5c45/cfTools/python/CalcReadLikelihood.py", line 10, in <module>
    from scipy.special import gamma
ModuleNotFoundError: No module named 'scipy'
Traceback (most recent call last):
  File "/private/var/folders/7y/c__3_48d5y18p1_rhfs_4x9c0000gt/T/RtmpXbhln5/Rinst980361bd5c45/cfTools/python/CancerDetector.py", line 10, in <module>
    import numpy as np
ModuleNotFoundError: No module named 'numpy'
Quitting from lines 224-225 (cfTools-vignette.Rmd) 
Error: processing vignette 'cfTools-vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘cfTools-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘cfTools-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

merida1 CHECK output

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merida1 BUILD BIN output
 
                    			
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nebbiolo1 Summary
 
                			
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Package: cfTools
 
                					
Version: 0.99.0
 
                					
RVersion: 4.3
                
 
                					
BiocVersion: 3.17
                
 

                					
BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data cfTools
 
                					
BuildTime: 0 minutes 48.79 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: cfTools_20230331122740
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: cfTools. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
nebbiolo1 BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘cfTools/DESCRIPTION’ ... OK
* preparing ‘cfTools’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cfTools-vignette.Rmd’ using rmarkdown
Traceback (most recent call last):
  File "/tmp/RtmpihqcgH/Rinst2039eb12d57f7e/cfTools/python/CalcReadLikelihood.py", line 10, in <module>
    from scipy.special import gamma
ModuleNotFoundError: No module named 'scipy'
Traceback (most recent call last):
  File "/tmp/RtmpihqcgH/Rinst2039eb12d57f7e/cfTools/python/CancerDetector.py", line 10, in <module>
    import numpy as np
ModuleNotFoundError: No module named 'numpy'
Quitting from lines 224-225 (cfTools-vignette.Rmd) 
Error: processing vignette 'cfTools-vignette.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘cfTools-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘cfTools-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted


                				
 

                			
 
                			    
                				
nebbiolo1 CHECK output
 
                    			
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nebbiolo1 BUILD BIN output
 
                    			
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