Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/CoSIA

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 22.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: CoSIA

Version: 0.99.0

RVersion: 4.3

BiocVersion: 3.17

BuildCommand: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CoSIA

BuildTime: 5 minutes 4.19 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: CoSIA_20230410150300

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: CoSIA. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘CoSIA/DESCRIPTION’ ... OK
* preparing ‘CoSIA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CoSIA_Intro.Rmd’ using rmarkdown
Quitting from lines 96-97 (CoSIA_Intro.Rmd) 
Error: processing vignette 'CoSIA_Intro.Rmd' failed with diagnostics:
Can't recycle `Frequency = table(Anatomical_entity_name)`.
Caused by error:
! `Frequency` must be size 224 or 1, not 165.
i An earlier column had size 224.
--- failed re-building ‘CoSIA_Intro.Rmd’

SUMMARY: processing the following file failed:
  ‘CoSIA_Intro.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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