===============================
R CMD BUILD
===============================
* checking for file ‘dreamlet/DESCRIPTION’ ... OK
* preparing ‘dreamlet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: dreamlet
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘cell_covs.Rmd’ using rmarkdown
Quitting from lines 56-78 [preprocess.data] (cell_covs.Rmd)
Error: processing vignette 'cell_covs.Rmd' failed with diagnostics:
package or namespace load failed for 'dreamlet' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called 'S4Vectors'
--- failed re-building ‘cell_covs.Rmd’
--- re-building ‘dreamlet.Rmd’ using rmarkdown
Quitting from lines 81-104 [preprocess.data] (dreamlet.Rmd)
Error: processing vignette 'dreamlet.Rmd' failed with diagnostics:
package or namespace load failed for 'dreamlet' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called 'S4Vectors'
--- failed re-building ‘dreamlet.Rmd’
--- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown
--- finished re-building ‘h5ad_on_disk.Rmd’
--- re-building ‘mashr.Rmd’ using rmarkdown
--- finished re-building ‘mashr.Rmd’
--- re-building ‘non_lin_eff.Rmd’ using rmarkdown
Quitting from lines 56-87 [preprocess.data] (non_lin_eff.Rmd)
Error: processing vignette 'non_lin_eff.Rmd' failed with diagnostics:
package or namespace load failed for 'dreamlet' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called 'S4Vectors'
--- failed re-building ‘non_lin_eff.Rmd’
SUMMARY: processing the following files failed:
‘cell_covs.Rmd’ ‘dreamlet.Rmd’ ‘non_lin_eff.Rmd’
Error: Vignette re-building failed.
Execution halted
===============================
R CMD BUILD
===============================
* checking for file ‘dreamlet/DESCRIPTION’ ... OK
* preparing ‘dreamlet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: dreamlet
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘cell_covs.Rmd’ using rmarkdown
Quitting from lines 136-137 [session] (cell_covs.Rmd)
Error: processing vignette 'cell_covs.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘cell_covs.Rmd’
--- re-building ‘dreamlet.Rmd’ using rmarkdown
Quitting from lines 339-340 [session] (dreamlet.Rmd)
Error: processing vignette 'dreamlet.Rmd' failed with diagnostics:
$ operator is invalid for atomic vectors
--- failed re-building ‘dreamlet.Rmd’
--- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown
--- finished re-building ‘h5ad_on_disk.Rmd’
--- re-building ‘mashr.Rmd’ using rmarkdown
--- finished re-building ‘mashr.Rmd’
--- re-building ‘non_lin_eff.Rmd’ using rmarkdown
Quitting from lines 193-194 [session] (non_lin_eff.Rmd)
Error: processing vignette 'non_lin_eff.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘non_lin_eff.Rmd’
SUMMARY: processing the following files failed:
‘cell_covs.Rmd’ ‘dreamlet.Rmd’ ‘non_lin_eff.Rmd’
Error: Vignette re-building failed.
Execution halted