nebbiolo2 Summary
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| Package: GNOSIS |
| Version: 0.99.0 |
| RVersion: 4.3
|
| BiocVersion: 3.18
|
| BuildCommand: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GNOSIS |
| BuildTime: 1 minutes 14.29 seconds |
| CheckCommand: BiocCheckGitClone('GNOSIS') && /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/3132/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.install-out.txt GNOSIS_0.99.0.tar.gz && BiocCheck('GNOSIS_0.99.0.tar.gz', `new-package`=TRUE) |
| CheckTime: 5 minutes 49.99 seconds |
| BuildBinCommand: |
| BuildBinTime: |
| PackageFileSize: 9024.45 KiB |
| BuildID:: GNOSIS_20230914150227 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GNOSIS. Starting Build package. Starting Check package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 1. |
nebbiolo2 BUILD SRC output
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===============================
R CMD BUILD
===============================
* checking for file ‘GNOSIS/DESCRIPTION’ ... OK
* preparing ‘GNOSIS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘GNOSIS_0.99.0.tar.gz’
nebbiolo2 CHECK output
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===============================
BiocCheckGitClone('GNOSIS')
===============================
─ BiocCheckVersion: 1.37.14
─ BiocVersion: 3.18
─ Package: GNOSIS
─ PackageVersion: 0.99.0
─ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GNOSIS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GNOSIS’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'shiny', 'shinydashboard', 'shinydashboardPlus', 'dashboardthemes',
'shinyWidgets', 'shinymeta', 'tidyverse', 'operator.tools',
'maftools'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘GNOSIS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [15s/15s] OK
* checking whether the package can be loaded with stated dependencies ... [16s/16s] OK
* checking whether the package can be unloaded cleanly ... [16s/16s] OK
* checking whether the namespace can be loaded with stated dependencies ... [14s/14s] OK
* checking whether the namespace can be unloaded cleanly ... [14s/14s] OK
* checking loading without being on the library search path ... [15s/15s] OK
* checking startup messages can be suppressed ... [15s/15s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘dashboardthemes’ ‘maftools’ ‘operator.tools’ ‘shiny’ ‘shinyWidgets’
‘shinydashboard’ ‘shinydashboardPlus’ ‘shinymeta’ ‘tidyverse’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [56s/56s] NOTE
Count_Col: no visible global function definition for ‘moduleServer’
Count_Col : <anonymous>: no visible global function definition for
‘metaExpr’
Count_Col : <anonymous>: no visible global function definition for ‘..’
Count_Row: no visible global function definition for ‘moduleServer’
Count_Row : <anonymous>: no visible global function definition for
‘metaExpr’
Count_Row : <anonymous>: no visible global function definition for ‘..’
Download_Server: no visible global function definition for
‘moduleServer’
Download_Server : <anonymous>: no visible global function definition
for ‘downloadHandler’
Download_Server : <anonymous> : <anonymous>: no visible global function
definition for ‘png’
Download_Server : <anonymous> : <anonymous>: no visible global function
definition for ‘dev.off’
Download_Server : <anonymous> : <anonymous>: no visible global function
definition for ‘svg’
Download_Server_1: no visible global function definition for
‘moduleServer’
Download_Server_1 : <anonymous>: no visible global function definition
for ‘downloadHandler’
Download_Server_1 : <anonymous> : <anonymous>: no visible global
function definition for ‘png’
Download_Server_1 : <anonymous> : <anonymous>: no visible global
function definition for ‘dev.off’
Download_Server_1 : <anonymous> : <anonymous>: no visible global
function definition for ‘svg’
Download_Server_2: no visible global function definition for
‘moduleServer’
Download_Server_2 : <anonymous>: no visible global function definition
for ‘downloadHandler’
Download_Server_2 : <anonymous> : <anonymous>: no visible global
function definition for ‘png’
Download_Server_2 : <anonymous> : <anonymous>: no visible global
function definition for ‘dev.off’
Download_Server_2 : <anonymous> : <anonymous>: no visible global
function definition for ‘svg’
GNOSIS: no visible global function definition for ‘dashboardPage’
GNOSIS: no visible global function definition for ‘dashboardHeader’
GNOSIS: no visible global function definition for ‘tagList’
GNOSIS: no visible global function definition for ‘span’
GNOSIS: no visible global function definition for ‘dashboardSidebar’
GNOSIS: no visible global function definition for ‘dashboardBody’
GNOSIS: no visible global function definition for
‘shinyDashboardThemes’
GNOSIS: no visible global function definition for ‘includeCSS’
GNOSIS: no visible global function definition for ‘HTML’
GNOSIS: no visible global function definition for ‘tabItems’
GNOSIS: no visible global function definition for ‘tabItem’
GNOSIS: no visible global function definition for ‘tabBox’
GNOSIS : server: no visible global function definition for ‘reactive’
GNOSIS : server: no visible global function definition for ‘metaRender’
GNOSIS : server: no visible binding for global variable ‘renderPrint’
GNOSIS : server: no visible global function definition for ‘..’
GNOSIS: no visible global function definition for ‘shinyApp’
GNOSIS_sidebarUI: no visible global function definition for ‘NS’
GNOSIS_sidebarUI: no visible global function definition for ‘tagList’
GNOSIS_sidebarUI: no visible global function definition for
‘sidebarMenu’
GNOSIS_sidebarUI: no visible global function definition for ‘menuItem’
GNOSIS_sidebarUI: no visible global function definition for
‘menuSubItem’
Tab10_MAF_Plot_Summary_Server: no visible global function definition
for ‘moduleServer’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘need’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘read.maf’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘..’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible binding for
global variable ‘PATIENT_ID’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘plotmafSummary’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible binding for
global variable ‘renderPlot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘downloadHandler’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘png’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘plotmafSummary’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘dev.off’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘svg’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘oncoplot’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘oncoplot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘updateSelectInput’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘oncostrip’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘oncostrip’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘titv’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘plotTiTv’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
binding for global variable ‘Tab10_TT_Plot_Width’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘Tab10_Summary_Plot_Fraction’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘plotTiTv’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘lollipopPlot’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘lollipopPlot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘tcgaCompare’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘tcgaCompare’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘somaticInteractions’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘somaticInteractions’
Tab10_MAF_Text_Summary_Server: no visible global function definition
for ‘moduleServer’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘need’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘read.maf’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘..’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible binding for
global variable ‘PATIENT_ID’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible binding for
global variable ‘renderPrint’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getSampleSummary’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getGeneSummary’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getFields’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getClinicalData’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘NS’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘tabBox’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘tabPanel’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘h5’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘strong’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘verbatimTextOutput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘NS’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘fluidRow’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘tabBox’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘tabPanel’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘box’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘boxDropdown’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘boxDropdownItem’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘HTML’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘boxSidebar’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘h5’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘strong’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘prettyToggle’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘selectInput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘sliderInput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘numericInput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘downloadButton’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘br’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘plotOutput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘column’
Tab11_Download_Code_UI: no visible global function definition for ‘NS’
Tab11_Download_Code_UI: no visible global function definition for
‘fluidRow’
Tab11_Download_Code_UI: no visible global function definition for ‘box’
Tab11_Download_Code_UI: no visible global function definition for
‘boxSidebar’
Tab11_Download_Code_UI: no visible global function definition for ‘h4’
Tab11_Download_Code_UI: no visible global function definition for
‘strong’
Tab11_Download_Code_UI: no visible global function definition for
‘selectInput’
Tab11_Download_Code_UI: no visible global function definition for
‘prettyToggle’
Tab11_Download_Code_UI: no visible global function definition for
‘awesomeCheckboxGroup’
Tab11_Download_Code_UI: no visible global function definition for
‘awesomeRadio’
Tab11_Download_Code_UI: no visible global function definition for
‘downloadButton’
Tab11_Log_Server: no visible global function definition for
‘moduleServer’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘reactive’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘rename’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘name’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘timestamp’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘value’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘type’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘binding’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘mutate’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Name’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘str_to_title’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Tab’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Timestamp’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘select’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Binding’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Value’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘%!in%’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘arrange_at’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘downloadHandler’
Tab11_Log_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘write.table’
Tab1_API_Files_Server: no visible global function definition for
‘moduleServer’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘..’
Tab1_Input_Files_API_UI: no visible global function definition for ‘NS’
Tab1_Input_Files_API_UI: no visible global function definition for
‘tabPanel’
Tab1_Input_Files_API_UI: no visible global function definition for
‘fluidRow’
Tab1_Input_Files_API_UI: no visible global function definition for
‘box’
Tab1_Input_Files_Manual_Server: no visible global function definition
for ‘moduleServer’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘metaReactive2’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘read.delim’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘..’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘need’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘NS’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘tabPanel’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘fluidRow’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘box’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘fileInput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘prettyToggle’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘column’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘awesomeRadio’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘textInput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘numericInput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘h5’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘strong’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘verbatimTextOutput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘HTML’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘NS’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘tabPanel’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘fluidRow’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘box’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘textOutput’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘NS’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘tabPanel’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘fluidRow’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘box’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘textOutput’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘NS’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘tabPanel’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘fluidRow’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘box’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘textOutput’
Tab1_Input_Files_Preview_Server: no visible global function definition
for ‘moduleServer’
Tab1_Input_Files_Preview_Server : <anonymous> : loading_API: no visible
global function definition for ‘req’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘observe’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘metaRender’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘..’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘NS’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘tabPanel’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘fluidRow’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘box’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘boxSidebar’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘h4’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘strong’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘selectizeInput’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘NS’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘tabPanel’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘fluidRow’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘box’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘boxSidebar’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘h4’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘strong’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘selectizeInput’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘NS’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘tabPanel’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘fluidRow’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘box’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘boxSidebar’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘h4’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘strong’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘selectizeInput’
Tab2_Exploratory_Tables_Server: no visible global function definition
for ‘moduleServer’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘observe’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘updateSelectizeInput’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘metaReactive2’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘as_tibble’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘..’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘mutate’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘:=’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible binding for
global variable ‘value’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘select’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘metaRender’
Tab3_CNACalc_Server: no visible global function definition for
‘moduleServer’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘need’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘str_split’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_CNACalc_Server : <anonymous>: no visible binding for global
variable ‘Hugo_Symbol’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘select’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘all_of’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘mutate_if’
Tab3_CNACalc_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘..’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab3_CNACalc_UI: no visible global function definition for ‘NS’
Tab3_CNACalc_UI: no visible global function definition for ‘fluidRow’
Tab3_CNACalc_UI: no visible global function definition for ‘box’
Tab3_CNACalc_UI: no visible global function definition for ‘boxSidebar’
Tab3_CNACalc_UI: no visible global function definition for ‘icon’
Tab3_CNACalc_UI: no visible global function definition for ‘h4’
Tab3_CNACalc_UI: no visible global function definition for ‘strong’
Tab3_CNACalc_UI: no visible global function definition for
‘numericInput’
Tab3_CNACalc_UI: no visible global function definition for
‘awesomeRadio’
Tab3_CNACalc_UI: no visible global function definition for
‘conditionalPanel’
Tab3_CNACalc_UI: no visible global function definition for ‘h5’
Tab3_CNACalc_UI: no visible global function definition for ‘textInput’
Tab3_CNACalc_UI: no visible global function definition for
‘prettyToggle’
Tab3_Data_Down_UI: no visible global function definition for ‘NS’
Tab3_Data_Down_UI: no visible global function definition for ‘fluidRow’
Tab3_Data_Down_UI: no visible global function definition for ‘box’
Tab3_Data_Down_UI: no visible global function definition for
‘boxSidebar’
Tab3_Data_Down_UI: no visible global function definition for ‘icon’
Tab3_Data_Down_UI: no visible global function definition for ‘h4’
Tab3_Data_Down_UI: no visible global function definition for ‘strong’
Tab3_Data_Down_UI: no visible global function definition for
‘awesomeRadio’
Tab3_Data_Down_UI: no visible global function definition for
‘prettyToggle’
Tab3_Data_Down_UI: no visible global function definition for
‘downloadButton’
Tab3_Download_Server: no visible global function definition for
‘moduleServer’
Tab3_Download_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab3_Download_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_Download_Server : <anonymous>: no visible global function
definition for ‘downloadHandler’
Tab3_Download_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘write.table’
Tab3_Factor_Levels_Server: no visible global function definition for
‘moduleServer’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘updateSelectInput’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘mutate_at’
Tab3_Factor_Levels_UI: no visible global function definition for ‘NS’
Tab3_Factor_Levels_UI: no visible global function definition for
‘fluidRow’
Tab3_Factor_Levels_UI: no visible global function definition for ‘box’
Tab3_Factor_Levels_UI: no visible global function definition for
‘verbatimTextOutput’
Tab3_Factor_Levels_UI: no visible global function definition for
‘boxSidebar’
Tab3_Factor_Levels_UI: no visible global function definition for ‘icon’
Tab3_Factor_Levels_UI: no visible global function definition for ‘h4’
Tab3_Factor_Levels_UI: no visible global function definition for
‘strong’
Tab3_Factor_Levels_UI: no visible global function definition for
‘selectInput’
Tab3_Recode_Server: no visible global function definition for
‘moduleServer’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘updateSelectInput’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘..’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘mutate’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab3_Recode_UI: no visible global function definition for ‘NS’
Tab3_Recode_UI: no visible global function definition for ‘fluidRow’
Tab3_Recode_UI: no visible global function definition for ‘box’
Tab3_Recode_UI: no visible global function definition for
‘awesomeRadio’
Tab3_Recode_UI: no visible global function definition for ‘selectInput’
Tab3_Recode_UI: no visible global function definition for ‘textInput’
Tab3_Recode_UI: no visible global function definition for
‘verbatimTextOutput’
Tab3_Render_Print_Server: no visible global function definition for
‘moduleServer’
Tab3_Render_Print_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab3_Render_Print_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab3_Render_Print_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_Subset_Server: no visible global function definition for
‘moduleServer’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘updateSelectInput’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘need’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘..’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘%!in%’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘mutate_at’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab3_Subset_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab3_Subset_UI: no visible global function definition for ‘NS’
Tab3_Subset_UI: no visible global function definition for ‘fluidRow’
Tab3_Subset_UI: no visible global function definition for ‘box’
Tab3_Subset_UI: no visible global function definition for ‘boxSidebar’
Tab3_Subset_UI: no visible global function definition for ‘icon’
Tab3_Subset_UI: no visible global function definition for ‘h4’
Tab3_Subset_UI: no visible global function definition for ‘strong’
Tab3_Subset_UI: no visible global function definition for ‘selectInput’
Tab3_Subset_UI: no visible global function definition for
‘verbatimTextOutput’
Tab4_Barplot_Server: no visible global function definition for
‘moduleServer’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘aes’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘geom_bar’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘ggtitle’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘ylab’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘xlab’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘labs’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘scale_x_discrete’
Tab4_Barplot_UI: no visible global function definition for ‘NS’
Tab4_Barplot_UI: no visible global function definition for ‘box’
Tab4_Barplot_UI: no visible global function definition for ‘plotOutput’
Tab4_Barplot_UI: no visible global function definition for ‘boxSidebar’
Tab4_Barplot_UI: no visible global function definition for
‘selectizeInput’
Tab4_Barplot_UI: no visible global function definition for
‘prettyToggle’
Tab4_Barplot_UI: no visible global function definition for
‘selectInput’
Tab4_Barplot_UI: no visible global function definition for ‘textInput’
Tab4_Barplot_UI: no visible global function definition for
‘numericInput’
Tab4_Barplot_UI: no visible global function definition for
‘downloadButton’
Tab4_Barplot_UI: no visible global function definition for ‘br’
Tab4_BoxPlots_Server: no visible global function definition for
‘moduleServer’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘aes’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘geom_boxplot’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘geom_jitter’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘ggtitle’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘ylab’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘xlab’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘stat_summary’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘labs’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘scale_color_discrete’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘scale_x_discrete’
Tab4_Boxplot_UI: no visible global function definition for ‘NS’
Tab4_Boxplot_UI: no visible global function definition for ‘box’
Tab4_Boxplot_UI: no visible global function definition for ‘plotOutput’
Tab4_Boxplot_UI: no visible global function definition for ‘boxSidebar’
Tab4_Boxplot_UI: no visible global function definition for
‘selectizeInput’
Tab4_Boxplot_UI: no visible global function definition for
‘prettyToggle’
Tab4_Boxplot_UI: no visible global function definition for
‘selectInput’
Tab4_Boxplot_UI: no visible global function definition for ‘textInput’
Tab4_Boxplot_UI: no visible global function definition for
‘numericInput’
Tab4_Boxplot_UI: no visible global function definition for
‘downloadButton’
Tab4_Boxplot_UI: no visible global function definition for ‘br’
Tab4_Density_UI: no visible global function definition for ‘NS’
Tab4_Density_UI: no visible global function definition for ‘box’
Tab4_Density_UI: no visible global function definition for ‘boxSidebar’
Tab4_Density_UI: no visible global function definition for
‘selectInput’
Tab4_Density_UI: no visible global function definition for
‘awesomeRadio’
Tab4_Density_UI: no visible global function definition for
‘conditionalPanel’
Tab4_Density_UI: no visible global function definition for ‘h5’
Tab4_Density_UI: no visible global function definition for ‘strong’
Tab4_Density_UI: no visible global function definition for
‘selectizeInput’
Tab4_Density_UI: no visible global function definition for
‘numericInput’
Tab4_Density_UI: no visible global function definition for
‘sliderInput’
Tab4_Density_UI: no visible global function definition for
‘prettyToggle’
Tab4_Density_UI: no visible global function definition for ‘textInput’
Tab4_Density_UI: no visible global function definition for
‘downloadButton’
Tab4_Density_UI: no visible global function definition for ‘br’
Tab4_Density_UI: no visible global function definition for ‘plotOutput’
Tab4_DisplayPlot_Server: no visible global function definition for
‘moduleServer’
Tab4_DisplayPlot_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab4_DisplayPlot_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab4_DisplayPlot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_Hist_Server: no visible global function definition for
‘moduleServer’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘ggplot’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘theme_void’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘..’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘aes’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_histogram’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘ggtitle’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘ylab’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘xlab’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_color_manual’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_fill_manual’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘theme_bw’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘theme’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘element_text’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_fill_discrete’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_color_discrete’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘value’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘facet_wrap’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘guides’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘renderPlot’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘downloadHandler’
Tab4_Hist_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘png’
Tab4_Hist_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘dev.off’
Tab4_Hist_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘svg’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_density’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘xlim’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘colorRampPalette’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘x’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘y’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_line’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_ribbon’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘quant’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_x_continuous’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘unit’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘..density..’
Tab4_Scatterplot_Server: no visible global function definition for
‘moduleServer’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘geom_point’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘aes’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘ggtitle’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘ylab’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘xlab’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘scale_colour_discrete’
Tab4_Scatterplot_UI: no visible global function definition for ‘NS’
Tab4_Scatterplot_UI: no visible global function definition for ‘box’
Tab4_Scatterplot_UI: no visible global function definition for
‘plotOutput’
Tab4_Scatterplot_UI: no visible global function definition for
‘boxSidebar’
Tab4_Scatterplot_UI: no visible global function definition for
‘selectizeInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘prettyToggle’
Tab4_Scatterplot_UI: no visible global function definition for
‘selectInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘textInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘numericInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘downloadButton’
Tab4_Scatterplot_UI: no visible global function definition for ‘br’
Tab5_Display_KM_Plot_Server: no visible global function definition for
‘moduleServer’
Tab5_Display_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_Display_KM_Plot_Server : <anonymous>: no visible binding for
global variable ‘renderPlot’
Tab5_Display_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Clin_UI: no visible global function definition for ‘NS’
Tab5_KM_Clin_UI: no visible global function definition for ‘tagList’
Tab5_KM_Clin_UI: no visible global function definition for ‘box’
Tab5_KM_Clin_UI: no visible global function definition for
‘boxDropdown’
Tab5_KM_Clin_UI: no visible global function definition for
‘boxDropdownItem’
Tab5_KM_Clin_UI: no visible global function definition for ‘HTML’
Tab5_KM_Clin_UI: no visible global function definition for ‘plotOutput’
Tab5_KM_Clin_UI: no visible global function definition for ‘boxSidebar’
Tab5_KM_Clin_UI: no visible global function definition for
‘selectizeInput’
Tab5_KM_Clin_UI: no visible global function definition for
‘prettyToggle’
Tab5_KM_Clin_UI: no visible global function definition for
‘selectInput’
Tab5_KM_Clin_UI: no visible global function definition for ‘textInput’
Tab5_KM_Clin_UI: no visible global function definition for
‘numericInput’
Tab5_KM_Clin_UI: no visible global function definition for
‘downloadButton’
Tab5_KM_Clin_UI: no visible global function definition for ‘br’
Tab5_KM_Clin_UI: no visible global function definition for
‘verbatimTextOutput’
Tab5_KM_Plot_Quart_Server: no visible global function definition for
‘moduleServer’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab5_KM_Plot_Server: no visible global function definition for
‘moduleServer’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_KM_Plot_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab5_KM_Plot_Treatment_Server: no visible global function definition
for ‘moduleServer’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible binding for
global variable ‘renderPrint’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘downloadHandler’
Tab5_KM_Plot_Treatment_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘png’
Tab5_KM_Plot_Treatment_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘dev.off’
Tab5_KM_Plot_Treatment_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘svg’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible binding for
global variable ‘renderPlot’
Tab5_KM_Quart_UI: no visible global function definition for ‘NS’
Tab5_KM_Quart_UI: no visible global function definition for ‘tagList’
Tab5_KM_Quart_UI: no visible global function definition for ‘box’
Tab5_KM_Quart_UI: no visible global function definition for
‘boxDropdown’
Tab5_KM_Quart_UI: no visible global function definition for
‘boxDropdownItem’
Tab5_KM_Quart_UI: no visible global function definition for ‘HTML’
Tab5_KM_Quart_UI: no visible global function definition for
‘plotOutput’
Tab5_KM_Quart_UI: no visible global function definition for
‘boxSidebar’
Tab5_KM_Quart_UI: no visible global function definition for
‘selectizeInput’
Tab5_KM_Quart_UI: no visible global function definition for
‘prettyToggle’
Tab5_KM_Quart_UI: no visible global function definition for
‘selectInput’
Tab5_KM_Quart_UI: no visible global function definition for ‘textInput’
Tab5_KM_Quart_UI: no visible global function definition for
‘numericInput’
Tab5_KM_Quart_UI: no visible global function definition for
‘downloadButton’
Tab5_KM_Quart_UI: no visible global function definition for ‘br’
Tab5_KM_Quart_UI: no visible global function definition for
‘verbatimTextOutput’
Tab5_KM_Treatment_UI: no visible global function definition for ‘NS’
Tab5_KM_Treatment_UI: no visible global function definition for
‘tagList’
Tab5_KM_Treatment_UI: no visible global function definition for ‘box’
Tab5_KM_Treatment_UI: no visible global function definition for
‘plotOutput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘boxDropdown’
Tab5_KM_Treatment_UI: no visible global function definition for
‘boxDropdownItem’
Tab5_KM_Treatment_UI: no visible global function definition for ‘HTML’
Tab5_KM_Treatment_UI: no visible global function definition for
‘boxSidebar’
Tab5_KM_Treatment_UI: no visible global function definition for
‘selectizeInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘prettyToggle’
Tab5_KM_Treatment_UI: no visible global function definition for
‘selectInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘textInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘numericInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘downloadButton’
Tab5_KM_Treatment_UI: no visible global function definition for ‘br’
Tab5_KM_Treatment_UI: no visible global function definition for
‘verbatimTextOutput’
Tab6_ANOVA_Server: no visible global function definition for
‘moduleServer’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘need’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘..’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab6_ANOVA_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘group_by’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘select’
Tab6_ANOVA_Server : <anonymous>: no visible binding for global variable
‘Adj_Pval’
Tab6_Association_Tests_UI: no visible global function definition for
‘NS’
Tab6_Association_Tests_UI: no visible global function definition for
‘box’
Tab6_Association_Tests_UI: no visible global function definition for
‘boxDropdown’
Tab6_Association_Tests_UI: no visible global function definition for
‘boxDropdownItem’
Tab6_Association_Tests_UI: no visible global function definition for
‘HTML’
Tab6_Association_Tests_UI: no visible global function definition for
‘boxSidebar’
Tab6_Association_Tests_UI: no visible global function definition for
‘selectInput’
Tab6_Association_Tests_UI: no visible global function definition for
‘conditionalPanel’
Tab6_Association_Tests_UI: no visible global function definition for
‘selectizeInput’
Tab6_Association_Tests_UI: no visible global function definition for
‘h4’
Tab6_Association_Tests_UI: no visible global function definition for
‘strong’
Tab6_Association_Tests_UI: no visible global function definition for
‘verbatimTextOutput’
Tab6_Association_Tests_UI: no visible global function definition for
‘br’
Tab6_Association_Tests_UI: no visible global function definition for
‘h5’
Tab6_Association_Tests_UI: no visible global function definition for
‘div’
Tab6_CG_Server: no visible global function definition for
‘moduleServer’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘observe’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘updateSelectizeInput’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘metaReactive2’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘need’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘metaExpr’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘..’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘metaRender’
Tab6_CG_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_Chi_Square_Server: no visible global function definition for
‘moduleServer’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘..’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘need’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab6_Chi_Square_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘%!in%’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘select’
Tab6_Chi_Square_Server : <anonymous>: no visible binding for global
variable ‘Adj_Pval’
Tab6_FE_Server: no visible global function definition for
‘moduleServer’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘observe’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘updateSelectizeInput’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘metaReactive2’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘metaExpr’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘..’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘need’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘metaRender’
Tab6_FE_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘select’
Tab6_FE_Server : <anonymous>: no visible binding for global variable
‘Adj_Pval’
Tab6_FE_Sim_Server: no visible global function definition for
‘moduleServer’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘..’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘need’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab6_FE_Sim_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘select’
Tab6_FE_Sim_Server : <anonymous>: no visible binding for global
variable ‘Adj_Pval’
Tab6_KW_Server: no visible global function definition for
‘moduleServer’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘observe’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘updateSelectizeInput’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘metaReactive2’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘need’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘metaExpr’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘..’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘metaRender’
Tab6_KW_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘select’
Tab6_KW_Server : <anonymous>: no visible binding for global variable
‘Adj_Pval’
Tab6_PWC_Server: no visible global function definition for
‘moduleServer’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘need’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘..’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab6_PWC_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab7_Assumption_CoxPH: no visible global function definition for ‘NS’
Tab7_Assumption_CoxPH: no visible global function definition for
‘fluidRow’
Tab7_Assumption_CoxPH: no visible global function definition for ‘box’
Tab7_Assumption_CoxPH: no visible global function definition for
‘boxDropdown’
Tab7_Assumption_CoxPH: no visible global function definition for
‘boxDropdownItem’
Tab7_Assumption_CoxPH: no visible global function definition for ‘HTML’
Tab7_Assumption_CoxPH: no visible global function definition for
‘boxSidebar’
Tab7_Assumption_CoxPH: no visible global function definition for ‘h5’
Tab7_Assumption_CoxPH: no visible global function definition for
‘strong’
Tab7_Assumption_CoxPH: no visible global function definition for
‘prettyToggle’
Tab7_Assumption_CoxPH: no visible global function definition for
‘numericInput’
Tab7_Assumption_CoxPH: no visible global function definition for
‘downloadButton’
Tab7_Assumption_CoxPH: no visible global function definition for ‘br’
Tab7_Assumption_CoxPH: no visible global function definition for
‘plotOutput’
Tab7_Multi_Cox_Server: no visible global function definition for
‘moduleServer’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘need’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘%!in%’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘..’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘select’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab7_Multi_Cox_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab7_Multi_Cox_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab7_Multivariate_CoxPH: no visible global function definition for ‘NS’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘fluidRow’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘box’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘boxDropdown’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘boxDropdownItem’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘HTML’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘verbatimTextOutput’
Tab7_Multivariate_CoxPH: no visible global function definition for ‘h5’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘strong’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘boxSidebar’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘selectizeInput’
Tab7_Uni_Cox_Server: no visible global function definition for
‘moduleServer’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘..’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘select’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘need’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘Adj_LRT’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘Adj_Wald’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘Adj_Logrank’
Tab7_Univariate_CoxPH: no visible global function definition for ‘NS’
Tab7_Univariate_CoxPH: no visible global function definition for
‘fluidRow’
Tab7_Univariate_CoxPH: no visible global function definition for ‘box’
Tab7_Univariate_CoxPH: no visible global function definition for
‘boxDropdown’
Tab7_Univariate_CoxPH: no visible global function definition for
‘boxDropdownItem’
Tab7_Univariate_CoxPH: no visible global function definition for ‘HTML’
Tab7_Univariate_CoxPH: no visible global function definition for
‘verbatimTextOutput’
Tab7_Univariate_CoxPH: no visible global function definition for ‘br’
Tab7_Univariate_CoxPH: no visible global function definition for ‘h4’
Tab7_Univariate_CoxPH: no visible global function definition for
‘strong’
Tab7_Univariate_CoxPH: no visible global function definition for
‘boxSidebar’
Tab7_Univariate_CoxPH: no visible global function definition for
‘selectizeInput’
Tab8_Adjusted_Survival_Curves_Server: no visible global function
definition for ‘moduleServer’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘metaRender’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible binding
for global variable ‘renderPrint’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘..’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘observe’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘updateSelectizeInput’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘metaReactive2’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘need’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘mutate’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘:=’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘select’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘updateSelectInput’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘theme_bw’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘theme’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘element_text’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘ggplot’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘theme_void’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible binding
for global variable ‘renderPlot’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘NS’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘fluidRow’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘box’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘verbatimTextOutput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘boxDropdown’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘boxDropdownItem’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘HTML’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘boxSidebar’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘selectizeInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘plotOutput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘selectInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘h5’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘strong’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘prettyToggle’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘textInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘numericInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘downloadButton’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘br’
Tab9_Ctree_UI: no visible global function definition for ‘NS’
Tab9_Ctree_UI: no visible global function definition for ‘fluidRow’
Tab9_Ctree_UI: no visible global function definition for ‘box’
Tab9_Ctree_UI: no visible global function definition for ‘plotOutput’
Tab9_Ctree_UI: no visible global function definition for ‘boxDropdown’
Tab9_Ctree_UI: no visible global function definition for
‘boxDropdownItem’
Tab9_Ctree_UI: no visible global function definition for ‘HTML’
Tab9_Ctree_UI: no visible global function definition for ‘boxSidebar’
Tab9_Ctree_UI: no visible global function definition for
‘selectizeInput’
Tab9_Ctree_UI: no visible global function definition for ‘prettyToggle’
Tab9_Ctree_UI: no visible global function definition for ‘selectInput’
Tab9_Ctree_UI: no visible global function definition for ‘sliderInput’
Tab9_Ctree_UI: no visible global function definition for ‘numericInput’
Tab9_Ctree_UI: no visible global function definition for
‘downloadButton’
Tab9_Ctree_UI: no visible global function definition for ‘br’
Tab9_Ctree_UI: no visible global function definition for ‘h5’
Tab9_Ctree_UI: no visible global function definition for ‘strong’
Tab9_Ctree_UI: no visible global function definition for ‘textInput’
Tab9_RPST_Ctree_Server: no visible global function definition for
‘moduleServer’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘..’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘.’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘need’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘select’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘Time’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘Node’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘Cen’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab9_RPST_Rpart_Server: no visible global function definition for
‘moduleServer’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘..’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘.’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘need’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘select’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘Time’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘Node’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘Cen’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab9_Rpart_UI: no visible global function definition for ‘NS’
Tab9_Rpart_UI: no visible global function definition for ‘fluidRow’
Tab9_Rpart_UI: no visible global function definition for ‘box’
Tab9_Rpart_UI: no visible global function definition for ‘plotOutput’
Tab9_Rpart_UI: no visible global function definition for ‘boxDropdown’
Tab9_Rpart_UI: no visible global function definition for
‘boxDropdownItem’
Tab9_Rpart_UI: no visible global function definition for ‘HTML’
Tab9_Rpart_UI: no visible global function definition for ‘boxSidebar’
Tab9_Rpart_UI: no visible global function definition for
‘selectizeInput’
Tab9_Rpart_UI: no visible global function definition for ‘sliderInput’
Tab9_Rpart_UI: no visible global function definition for ‘numericInput’
Tab9_Rpart_UI: no visible global function definition for
‘downloadButton’
Tab9_Rpart_UI: no visible global function definition for ‘br’
Tab9_Rpart_UI: no visible global function definition for ‘h5’
Tab9_Rpart_UI: no visible global function definition for ‘strong’
Tab9_Rpart_UI: no visible global function definition for ‘prettyToggle’
Tab9_Rpart_UI: no visible global function definition for ‘selectInput’
Tab9_Rpart_UI: no visible global function definition for ‘textInput’
Undefined global functions or variables:
%!in% . .. ..density.. := Adj_LRT Adj_Logrank Adj_Pval Adj_Wald
Binding Cen HTML Hugo_Symbol NS Name Node PATIENT_ID Tab
Tab10_Summary_Plot_Fraction Tab10_TT_Plot_Width Time Timestamp Value
aes all_of arrange_at as_tibble awesomeCheckboxGroup awesomeRadio
binding box boxDropdown boxDropdownItem boxSidebar br
colorRampPalette column conditionalPanel dashboardBody
dashboardHeader dashboardPage dashboardSidebar dev.off div
downloadButton downloadHandler element_text facet_wrap fileInput
fluidRow geom_bar geom_boxplot geom_density geom_histogram
geom_jitter geom_line geom_point geom_ribbon getClinicalData
getFields getGeneSummary getSampleSummary ggplot ggtitle group_by
guides h4 h5 icon includeCSS labs lollipopPlot menuItem menuSubItem
metaExpr metaReactive2 metaRender moduleServer mutate mutate_at
mutate_if name need numericInput observe oncoplot oncostrip
plotOutput plotTiTv plotmafSummary png prettyToggle quant reactive
read.delim read.maf rename renderPlot renderPrint req
scale_color_discrete scale_color_manual scale_colour_discrete
scale_fill_discrete scale_fill_manual scale_x_continuous
scale_x_discrete select selectInput selectizeInput shinyApp
shinyDashboardThemes sidebarMenu sliderInput somaticInteractions span
stat_summary str_split str_to_title strong svg tabBox tabItem
tabItems tabPanel tagList tcgaCompare textInput textOutput theme
theme_bw theme_void timestamp titv type unit updateSelectInput
updateSelectizeInput value verbatimTextOutput write.table x xlab xlim
y ylab
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.off", "png", "svg")
importFrom("graphics", "box")
importFrom("utils", "read.delim", "timestamp", "write.table")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [17s/17s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [2s/2s] OK
* DONE
Status: 3 NOTEs
See
‘/home/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.Rcheck/00check.log’
for details.
===============================
BiocCheck('GNOSIS_0.99.0.tar.gz')
===============================
─ BiocCheckVersion: 1.37.14
─ BiocVersion: 3.18
─ Package: GNOSIS
─ PackageVersion: 0.99.0
─ sourceDir: /tmp/Rtmp5MK64b/file7ffb15fe44a4a/GNOSIS
─ installDir: /tmp/Rtmp5MK64b/file7ffb164d58ba9
─ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* ERROR: Package tarball exceeds the Bioconductor size requirement.
* Checking individual file sizes...
* WARNING: Package files exceed the 5MB size limit.
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* NOTE: Consider adding these automatically suggested biocViews:
Sequencing, Classification, DNASeq, FunctionalGenomics,
DriverMutation, SomaticMutation, VariantAnnotation,
FeatureExtraction
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for recommeded fields in DESCRIPTION...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of GNOSIS...
* Checking coding practice...
* NOTE: Avoid 1:...; use seq_len() or seq_along()
* NOTE: Avoid 'cat' and 'print' outside of 'show' methods
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
are 83 functions greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 1171 lines (7%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 18 lines
(0%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
1 ERRORS | 1 WARNINGS | 7 NOTES
See the GNOSIS.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
nebbiolo2 BUILD BIN output
[top]
lconway Summary
[top]
| Package: GNOSIS |
| Version: 0.99.0 |
| RVersion: 4.3
|
| BiocVersion: 3.18
|
| BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GNOSIS |
| BuildTime: 0 minutes 55.56 seconds |
| CheckCommand: BiocCheckGitClone('GNOSIS') && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --library=/Users/pkgbuild/packagebuilder/workers/jobs/3132/R-libs --install=check:/Users/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.install-out.txt GNOSIS_0.99.0.tar.gz && BiocCheck('GNOSIS_0.99.0.tar.gz', `new-package`=TRUE) |
| CheckTime: 4 minutes 26.59 seconds |
| BuildBinCommand: /Users/biocbuild/BBS/utils/build-universal.sh GNOSIS_0.99.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R libdir |
| BuildBinTime: 0 minutes 37.50 seconds |
| PackageFileSize: 9024.48 KiB |
| BuildID:: GNOSIS_20230914150227 |
| PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GNOSIS. Starting Build package. Starting Check package. Starting Build package. |
| PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 1. Build Package status: 0. |
lconway BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘GNOSIS/DESCRIPTION’ ... OK
* preparing ‘GNOSIS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* building ‘GNOSIS_0.99.0.tar.gz’
lconway CHECK output
[top]
===============================
BiocCheckGitClone('GNOSIS')
===============================
─ BiocCheckVersion: 1.37.14
─ BiocVersion: 3.18
─ Package: GNOSIS
─ PackageVersion: 0.99.0
─ sourceDir: /Users/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/Users/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.Rcheck’
* using R version 4.3.1 Patched (2023-06-17 r84564)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GNOSIS/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GNOSIS’ version ‘0.99.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
'shiny', 'shinydashboard', 'shinydashboardPlus', 'dashboardthemes',
'shinyWidgets', 'shinymeta', 'tidyverse', 'operator.tools',
'maftools'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘GNOSIS’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [11s/11s] OK
* checking whether the package can be loaded with stated dependencies ... [11s/11s] OK
* checking whether the package can be unloaded cleanly ... [11s/11s] OK
* checking whether the namespace can be loaded with stated dependencies ... [10s/10s] OK
* checking whether the namespace can be unloaded cleanly ... [11s/11s] OK
* checking loading without being on the library search path ... [11s/11s] OK
* checking startup messages can be suppressed ... [11s/11s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
‘dashboardthemes’ ‘maftools’ ‘operator.tools’ ‘shiny’ ‘shinyWidgets’
‘shinydashboard’ ‘shinydashboardPlus’ ‘shinymeta’ ‘tidyverse’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [39s/40s] NOTE
Count_Col: no visible global function definition for ‘moduleServer’
Count_Col : <anonymous>: no visible global function definition for
‘metaExpr’
Count_Col : <anonymous>: no visible global function definition for ‘..’
Count_Row: no visible global function definition for ‘moduleServer’
Count_Row : <anonymous>: no visible global function definition for
‘metaExpr’
Count_Row : <anonymous>: no visible global function definition for ‘..’
Download_Server: no visible global function definition for
‘moduleServer’
Download_Server : <anonymous>: no visible global function definition
for ‘downloadHandler’
Download_Server : <anonymous> : <anonymous>: no visible global function
definition for ‘png’
Download_Server : <anonymous> : <anonymous>: no visible global function
definition for ‘dev.off’
Download_Server : <anonymous> : <anonymous>: no visible global function
definition for ‘svg’
Download_Server_1: no visible global function definition for
‘moduleServer’
Download_Server_1 : <anonymous>: no visible global function definition
for ‘downloadHandler’
Download_Server_1 : <anonymous> : <anonymous>: no visible global
function definition for ‘png’
Download_Server_1 : <anonymous> : <anonymous>: no visible global
function definition for ‘dev.off’
Download_Server_1 : <anonymous> : <anonymous>: no visible global
function definition for ‘svg’
Download_Server_2: no visible global function definition for
‘moduleServer’
Download_Server_2 : <anonymous>: no visible global function definition
for ‘downloadHandler’
Download_Server_2 : <anonymous> : <anonymous>: no visible global
function definition for ‘png’
Download_Server_2 : <anonymous> : <anonymous>: no visible global
function definition for ‘dev.off’
Download_Server_2 : <anonymous> : <anonymous>: no visible global
function definition for ‘svg’
GNOSIS: no visible global function definition for ‘dashboardPage’
GNOSIS: no visible global function definition for ‘dashboardHeader’
GNOSIS: no visible global function definition for ‘tagList’
GNOSIS: no visible global function definition for ‘span’
GNOSIS: no visible global function definition for ‘dashboardSidebar’
GNOSIS: no visible global function definition for ‘dashboardBody’
GNOSIS: no visible global function definition for
‘shinyDashboardThemes’
GNOSIS: no visible global function definition for ‘includeCSS’
GNOSIS: no visible global function definition for ‘HTML’
GNOSIS: no visible global function definition for ‘tabItems’
GNOSIS: no visible global function definition for ‘tabItem’
GNOSIS: no visible global function definition for ‘tabBox’
GNOSIS : server: no visible global function definition for ‘reactive’
GNOSIS : server: no visible global function definition for ‘metaRender’
GNOSIS : server: no visible binding for global variable ‘renderPrint’
GNOSIS : server: no visible global function definition for ‘..’
GNOSIS: no visible global function definition for ‘shinyApp’
GNOSIS_sidebarUI: no visible global function definition for ‘NS’
GNOSIS_sidebarUI: no visible global function definition for ‘tagList’
GNOSIS_sidebarUI: no visible global function definition for
‘sidebarMenu’
GNOSIS_sidebarUI: no visible global function definition for ‘menuItem’
GNOSIS_sidebarUI: no visible global function definition for
‘menuSubItem’
Tab10_MAF_Plot_Summary_Server: no visible global function definition
for ‘moduleServer’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘need’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘read.maf’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘..’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible binding for
global variable ‘PATIENT_ID’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘plotmafSummary’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible binding for
global variable ‘renderPlot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘downloadHandler’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘png’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘plotmafSummary’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘dev.off’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘svg’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘oncoplot’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘oncoplot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘updateSelectInput’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘oncostrip’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘oncostrip’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘titv’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘plotTiTv’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
binding for global variable ‘Tab10_TT_Plot_Width’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘Tab10_Summary_Plot_Fraction’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘plotTiTv’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘lollipopPlot’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘lollipopPlot’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘tcgaCompare’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘tcgaCompare’
Tab10_MAF_Plot_Summary_Server : <anonymous>: no visible global function
definition for ‘somaticInteractions’
Tab10_MAF_Plot_Summary_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘somaticInteractions’
Tab10_MAF_Text_Summary_Server: no visible global function definition
for ‘moduleServer’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘need’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘read.maf’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘..’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible binding for
global variable ‘PATIENT_ID’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible binding for
global variable ‘renderPrint’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getSampleSummary’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getGeneSummary’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getFields’
Tab10_MAF_Text_Summary_Server : <anonymous>: no visible global function
definition for ‘getClinicalData’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘NS’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘tabBox’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘tabPanel’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘h5’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘strong’
Tab10_MAF_Text_Summary_UI: no visible global function definition for
‘verbatimTextOutput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘NS’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘fluidRow’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘tabBox’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘tabPanel’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘box’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘boxDropdown’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘boxDropdownItem’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘HTML’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘boxSidebar’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘h5’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘strong’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘prettyToggle’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘selectInput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘sliderInput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘numericInput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘downloadButton’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘br’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘plotOutput’
Tab10_MAF_Visual_Summary_UI: no visible global function definition for
‘column’
Tab11_Download_Code_UI: no visible global function definition for ‘NS’
Tab11_Download_Code_UI: no visible global function definition for
‘fluidRow’
Tab11_Download_Code_UI: no visible global function definition for ‘box’
Tab11_Download_Code_UI: no visible global function definition for
‘boxSidebar’
Tab11_Download_Code_UI: no visible global function definition for ‘h4’
Tab11_Download_Code_UI: no visible global function definition for
‘strong’
Tab11_Download_Code_UI: no visible global function definition for
‘selectInput’
Tab11_Download_Code_UI: no visible global function definition for
‘prettyToggle’
Tab11_Download_Code_UI: no visible global function definition for
‘awesomeCheckboxGroup’
Tab11_Download_Code_UI: no visible global function definition for
‘awesomeRadio’
Tab11_Download_Code_UI: no visible global function definition for
‘downloadButton’
Tab11_Log_Server: no visible global function definition for
‘moduleServer’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘reactive’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘rename’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘name’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘timestamp’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘value’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘type’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘binding’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘mutate’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Name’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘str_to_title’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Tab’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Timestamp’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘select’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Binding’
Tab11_Log_Server : <anonymous>: no visible binding for global variable
‘Value’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘%!in%’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘arrange_at’
Tab11_Log_Server : <anonymous>: no visible global function definition
for ‘downloadHandler’
Tab11_Log_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘write.table’
Tab1_API_Files_Server: no visible global function definition for
‘moduleServer’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab1_API_Files_Server : <anonymous>: no visible global function
definition for ‘..’
Tab1_Input_Files_API_UI: no visible global function definition for ‘NS’
Tab1_Input_Files_API_UI: no visible global function definition for
‘tabPanel’
Tab1_Input_Files_API_UI: no visible global function definition for
‘fluidRow’
Tab1_Input_Files_API_UI: no visible global function definition for
‘box’
Tab1_Input_Files_Manual_Server: no visible global function definition
for ‘moduleServer’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘metaReactive2’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘read.delim’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘..’
Tab1_Input_Files_Manual_Server : <anonymous>: no visible global
function definition for ‘need’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘NS’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘tabPanel’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘fluidRow’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘box’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘fileInput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘prettyToggle’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘column’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘awesomeRadio’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘textInput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘numericInput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘h5’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘strong’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘verbatimTextOutput’
Tab1_Input_Files_Manual_UI: no visible global function definition for
‘HTML’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘NS’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘tabPanel’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘fluidRow’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘box’
Tab1_Input_Files_Preview_CNA_UI: no visible global function definition
for ‘textOutput’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘NS’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘tabPanel’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘fluidRow’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘box’
Tab1_Input_Files_Preview_Clin_UI: no visible global function definition
for ‘textOutput’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘NS’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘tabPanel’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘fluidRow’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘box’
Tab1_Input_Files_Preview_MAF_UI: no visible global function definition
for ‘textOutput’
Tab1_Input_Files_Preview_Server: no visible global function definition
for ‘moduleServer’
Tab1_Input_Files_Preview_Server : <anonymous> : loading_API: no visible
global function definition for ‘req’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘observe’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘metaRender’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab1_Input_Files_Preview_Server : <anonymous>: no visible global
function definition for ‘..’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘NS’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘tabPanel’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘fluidRow’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘box’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘boxSidebar’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘h4’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘strong’
Tab2_Exploaratory_Tables_CNA_UI: no visible global function definition
for ‘selectizeInput’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘NS’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘tabPanel’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘fluidRow’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘box’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘boxSidebar’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘h4’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘strong’
Tab2_Exploaratory_Tables_Clin_UI: no visible global function definition
for ‘selectizeInput’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘NS’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘tabPanel’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘fluidRow’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘box’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘boxSidebar’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘h4’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘strong’
Tab2_Exploaratory_Tables_MAF_UI: no visible global function definition
for ‘selectizeInput’
Tab2_Exploratory_Tables_Server: no visible global function definition
for ‘moduleServer’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘observe’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘updateSelectizeInput’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘metaReactive2’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘as_tibble’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘..’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘mutate’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘:=’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible binding for
global variable ‘value’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘select’
Tab2_Exploratory_Tables_Server : <anonymous>: no visible global
function definition for ‘metaRender’
Tab3_CNACalc_Server: no visible global function definition for
‘moduleServer’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘need’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘str_split’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_CNACalc_Server : <anonymous>: no visible binding for global
variable ‘Hugo_Symbol’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘select’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘all_of’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘mutate_if’
Tab3_CNACalc_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘..’
Tab3_CNACalc_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab3_CNACalc_UI: no visible global function definition for ‘NS’
Tab3_CNACalc_UI: no visible global function definition for ‘fluidRow’
Tab3_CNACalc_UI: no visible global function definition for ‘box’
Tab3_CNACalc_UI: no visible global function definition for ‘boxSidebar’
Tab3_CNACalc_UI: no visible global function definition for ‘icon’
Tab3_CNACalc_UI: no visible global function definition for ‘h4’
Tab3_CNACalc_UI: no visible global function definition for ‘strong’
Tab3_CNACalc_UI: no visible global function definition for
‘numericInput’
Tab3_CNACalc_UI: no visible global function definition for
‘awesomeRadio’
Tab3_CNACalc_UI: no visible global function definition for
‘conditionalPanel’
Tab3_CNACalc_UI: no visible global function definition for ‘h5’
Tab3_CNACalc_UI: no visible global function definition for ‘textInput’
Tab3_CNACalc_UI: no visible global function definition for
‘prettyToggle’
Tab3_Data_Down_UI: no visible global function definition for ‘NS’
Tab3_Data_Down_UI: no visible global function definition for ‘fluidRow’
Tab3_Data_Down_UI: no visible global function definition for ‘box’
Tab3_Data_Down_UI: no visible global function definition for
‘boxSidebar’
Tab3_Data_Down_UI: no visible global function definition for ‘icon’
Tab3_Data_Down_UI: no visible global function definition for ‘h4’
Tab3_Data_Down_UI: no visible global function definition for ‘strong’
Tab3_Data_Down_UI: no visible global function definition for
‘awesomeRadio’
Tab3_Data_Down_UI: no visible global function definition for
‘prettyToggle’
Tab3_Data_Down_UI: no visible global function definition for
‘downloadButton’
Tab3_Download_Server: no visible global function definition for
‘moduleServer’
Tab3_Download_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab3_Download_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_Download_Server : <anonymous>: no visible global function
definition for ‘downloadHandler’
Tab3_Download_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘write.table’
Tab3_Factor_Levels_Server: no visible global function definition for
‘moduleServer’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘updateSelectInput’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_Factor_Levels_Server : <anonymous>: no visible global function
definition for ‘mutate_at’
Tab3_Factor_Levels_UI: no visible global function definition for ‘NS’
Tab3_Factor_Levels_UI: no visible global function definition for
‘fluidRow’
Tab3_Factor_Levels_UI: no visible global function definition for ‘box’
Tab3_Factor_Levels_UI: no visible global function definition for
‘verbatimTextOutput’
Tab3_Factor_Levels_UI: no visible global function definition for
‘boxSidebar’
Tab3_Factor_Levels_UI: no visible global function definition for ‘icon’
Tab3_Factor_Levels_UI: no visible global function definition for ‘h4’
Tab3_Factor_Levels_UI: no visible global function definition for
‘strong’
Tab3_Factor_Levels_UI: no visible global function definition for
‘selectInput’
Tab3_Recode_Server: no visible global function definition for
‘moduleServer’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘updateSelectInput’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘..’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘mutate’
Tab3_Recode_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab3_Recode_UI: no visible global function definition for ‘NS’
Tab3_Recode_UI: no visible global function definition for ‘fluidRow’
Tab3_Recode_UI: no visible global function definition for ‘box’
Tab3_Recode_UI: no visible global function definition for
‘awesomeRadio’
Tab3_Recode_UI: no visible global function definition for ‘selectInput’
Tab3_Recode_UI: no visible global function definition for ‘textInput’
Tab3_Recode_UI: no visible global function definition for
‘verbatimTextOutput’
Tab3_Render_Print_Server: no visible global function definition for
‘moduleServer’
Tab3_Render_Print_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab3_Render_Print_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab3_Render_Print_Server : <anonymous>: no visible global function
definition for ‘..’
Tab3_Subset_Server: no visible global function definition for
‘moduleServer’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘updateSelectInput’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘need’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘..’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘%!in%’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘mutate_at’
Tab3_Subset_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab3_Subset_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab3_Subset_UI: no visible global function definition for ‘NS’
Tab3_Subset_UI: no visible global function definition for ‘fluidRow’
Tab3_Subset_UI: no visible global function definition for ‘box’
Tab3_Subset_UI: no visible global function definition for ‘boxSidebar’
Tab3_Subset_UI: no visible global function definition for ‘icon’
Tab3_Subset_UI: no visible global function definition for ‘h4’
Tab3_Subset_UI: no visible global function definition for ‘strong’
Tab3_Subset_UI: no visible global function definition for ‘selectInput’
Tab3_Subset_UI: no visible global function definition for
‘verbatimTextOutput’
Tab4_Barplot_Server: no visible global function definition for
‘moduleServer’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘aes’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘geom_bar’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘ggtitle’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘ylab’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘xlab’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘labs’
Tab4_Barplot_Server : <anonymous>: no visible global function
definition for ‘scale_x_discrete’
Tab4_Barplot_UI: no visible global function definition for ‘NS’
Tab4_Barplot_UI: no visible global function definition for ‘box’
Tab4_Barplot_UI: no visible global function definition for ‘plotOutput’
Tab4_Barplot_UI: no visible global function definition for ‘boxSidebar’
Tab4_Barplot_UI: no visible global function definition for
‘selectizeInput’
Tab4_Barplot_UI: no visible global function definition for
‘prettyToggle’
Tab4_Barplot_UI: no visible global function definition for
‘selectInput’
Tab4_Barplot_UI: no visible global function definition for ‘textInput’
Tab4_Barplot_UI: no visible global function definition for
‘numericInput’
Tab4_Barplot_UI: no visible global function definition for
‘downloadButton’
Tab4_Barplot_UI: no visible global function definition for ‘br’
Tab4_BoxPlots_Server: no visible global function definition for
‘moduleServer’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘aes’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘geom_boxplot’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘geom_jitter’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘ggtitle’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘ylab’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘xlab’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘stat_summary’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘labs’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘scale_color_discrete’
Tab4_BoxPlots_Server : <anonymous>: no visible global function
definition for ‘scale_x_discrete’
Tab4_Boxplot_UI: no visible global function definition for ‘NS’
Tab4_Boxplot_UI: no visible global function definition for ‘box’
Tab4_Boxplot_UI: no visible global function definition for ‘plotOutput’
Tab4_Boxplot_UI: no visible global function definition for ‘boxSidebar’
Tab4_Boxplot_UI: no visible global function definition for
‘selectizeInput’
Tab4_Boxplot_UI: no visible global function definition for
‘prettyToggle’
Tab4_Boxplot_UI: no visible global function definition for
‘selectInput’
Tab4_Boxplot_UI: no visible global function definition for ‘textInput’
Tab4_Boxplot_UI: no visible global function definition for
‘numericInput’
Tab4_Boxplot_UI: no visible global function definition for
‘downloadButton’
Tab4_Boxplot_UI: no visible global function definition for ‘br’
Tab4_Density_UI: no visible global function definition for ‘NS’
Tab4_Density_UI: no visible global function definition for ‘box’
Tab4_Density_UI: no visible global function definition for ‘boxSidebar’
Tab4_Density_UI: no visible global function definition for
‘selectInput’
Tab4_Density_UI: no visible global function definition for
‘awesomeRadio’
Tab4_Density_UI: no visible global function definition for
‘conditionalPanel’
Tab4_Density_UI: no visible global function definition for ‘h5’
Tab4_Density_UI: no visible global function definition for ‘strong’
Tab4_Density_UI: no visible global function definition for
‘selectizeInput’
Tab4_Density_UI: no visible global function definition for
‘numericInput’
Tab4_Density_UI: no visible global function definition for
‘sliderInput’
Tab4_Density_UI: no visible global function definition for
‘prettyToggle’
Tab4_Density_UI: no visible global function definition for ‘textInput’
Tab4_Density_UI: no visible global function definition for
‘downloadButton’
Tab4_Density_UI: no visible global function definition for ‘br’
Tab4_Density_UI: no visible global function definition for ‘plotOutput’
Tab4_DisplayPlot_Server: no visible global function definition for
‘moduleServer’
Tab4_DisplayPlot_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab4_DisplayPlot_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab4_DisplayPlot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_Hist_Server: no visible global function definition for
‘moduleServer’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘ggplot’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘theme_void’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘..’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘aes’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_histogram’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘ggtitle’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘ylab’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘xlab’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_color_manual’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_fill_manual’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘theme_bw’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘theme’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘element_text’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_fill_discrete’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_color_discrete’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘value’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘facet_wrap’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘guides’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘renderPlot’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘downloadHandler’
Tab4_Hist_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘png’
Tab4_Hist_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘dev.off’
Tab4_Hist_Server : <anonymous> : <anonymous>: no visible global
function definition for ‘svg’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_density’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘xlim’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘colorRampPalette’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘x’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘y’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_line’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘geom_ribbon’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘quant’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘scale_x_continuous’
Tab4_Hist_Server : <anonymous>: no visible global function definition
for ‘unit’
Tab4_Hist_Server : <anonymous>: no visible binding for global variable
‘..density..’
Tab4_Scatterplot_Server: no visible global function definition for
‘moduleServer’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘geom_point’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘aes’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘ggtitle’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘ylab’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘xlab’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab4_Scatterplot_Server : <anonymous>: no visible global function
definition for ‘scale_colour_discrete’
Tab4_Scatterplot_UI: no visible global function definition for ‘NS’
Tab4_Scatterplot_UI: no visible global function definition for ‘box’
Tab4_Scatterplot_UI: no visible global function definition for
‘plotOutput’
Tab4_Scatterplot_UI: no visible global function definition for
‘boxSidebar’
Tab4_Scatterplot_UI: no visible global function definition for
‘selectizeInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘prettyToggle’
Tab4_Scatterplot_UI: no visible global function definition for
‘selectInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘textInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘numericInput’
Tab4_Scatterplot_UI: no visible global function definition for
‘downloadButton’
Tab4_Scatterplot_UI: no visible global function definition for ‘br’
Tab5_Display_KM_Plot_Server: no visible global function definition for
‘moduleServer’
Tab5_Display_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_Display_KM_Plot_Server : <anonymous>: no visible binding for
global variable ‘renderPlot’
Tab5_Display_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Clin_UI: no visible global function definition for ‘NS’
Tab5_KM_Clin_UI: no visible global function definition for ‘tagList’
Tab5_KM_Clin_UI: no visible global function definition for ‘box’
Tab5_KM_Clin_UI: no visible global function definition for
‘boxDropdown’
Tab5_KM_Clin_UI: no visible global function definition for
‘boxDropdownItem’
Tab5_KM_Clin_UI: no visible global function definition for ‘HTML’
Tab5_KM_Clin_UI: no visible global function definition for ‘plotOutput’
Tab5_KM_Clin_UI: no visible global function definition for ‘boxSidebar’
Tab5_KM_Clin_UI: no visible global function definition for
‘selectizeInput’
Tab5_KM_Clin_UI: no visible global function definition for
‘prettyToggle’
Tab5_KM_Clin_UI: no visible global function definition for
‘selectInput’
Tab5_KM_Clin_UI: no visible global function definition for ‘textInput’
Tab5_KM_Clin_UI: no visible global function definition for
‘numericInput’
Tab5_KM_Clin_UI: no visible global function definition for
‘downloadButton’
Tab5_KM_Clin_UI: no visible global function definition for ‘br’
Tab5_KM_Clin_UI: no visible global function definition for
‘verbatimTextOutput’
Tab5_KM_Plot_Quart_Server: no visible global function definition for
‘moduleServer’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_KM_Plot_Quart_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab5_KM_Plot_Server: no visible global function definition for
‘moduleServer’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab5_KM_Plot_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_KM_Plot_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab5_KM_Plot_Treatment_Server: no visible global function definition
for ‘moduleServer’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘..’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible binding for
global variable ‘renderPrint’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible global function
definition for ‘downloadHandler’
Tab5_KM_Plot_Treatment_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘png’
Tab5_KM_Plot_Treatment_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘dev.off’
Tab5_KM_Plot_Treatment_Server : <anonymous> : <anonymous>: no visible
global function definition for ‘svg’
Tab5_KM_Plot_Treatment_Server : <anonymous>: no visible binding for
global variable ‘renderPlot’
Tab5_KM_Quart_UI: no visible global function definition for ‘NS’
Tab5_KM_Quart_UI: no visible global function definition for ‘tagList’
Tab5_KM_Quart_UI: no visible global function definition for ‘box’
Tab5_KM_Quart_UI: no visible global function definition for
‘boxDropdown’
Tab5_KM_Quart_UI: no visible global function definition for
‘boxDropdownItem’
Tab5_KM_Quart_UI: no visible global function definition for ‘HTML’
Tab5_KM_Quart_UI: no visible global function definition for
‘plotOutput’
Tab5_KM_Quart_UI: no visible global function definition for
‘boxSidebar’
Tab5_KM_Quart_UI: no visible global function definition for
‘selectizeInput’
Tab5_KM_Quart_UI: no visible global function definition for
‘prettyToggle’
Tab5_KM_Quart_UI: no visible global function definition for
‘selectInput’
Tab5_KM_Quart_UI: no visible global function definition for ‘textInput’
Tab5_KM_Quart_UI: no visible global function definition for
‘numericInput’
Tab5_KM_Quart_UI: no visible global function definition for
‘downloadButton’
Tab5_KM_Quart_UI: no visible global function definition for ‘br’
Tab5_KM_Quart_UI: no visible global function definition for
‘verbatimTextOutput’
Tab5_KM_Treatment_UI: no visible global function definition for ‘NS’
Tab5_KM_Treatment_UI: no visible global function definition for
‘tagList’
Tab5_KM_Treatment_UI: no visible global function definition for ‘box’
Tab5_KM_Treatment_UI: no visible global function definition for
‘plotOutput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘boxDropdown’
Tab5_KM_Treatment_UI: no visible global function definition for
‘boxDropdownItem’
Tab5_KM_Treatment_UI: no visible global function definition for ‘HTML’
Tab5_KM_Treatment_UI: no visible global function definition for
‘boxSidebar’
Tab5_KM_Treatment_UI: no visible global function definition for
‘selectizeInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘prettyToggle’
Tab5_KM_Treatment_UI: no visible global function definition for
‘selectInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘textInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘numericInput’
Tab5_KM_Treatment_UI: no visible global function definition for
‘downloadButton’
Tab5_KM_Treatment_UI: no visible global function definition for ‘br’
Tab5_KM_Treatment_UI: no visible global function definition for
‘verbatimTextOutput’
Tab6_ANOVA_Server: no visible global function definition for
‘moduleServer’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘need’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘..’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab6_ANOVA_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘group_by’
Tab6_ANOVA_Server : <anonymous>: no visible global function definition
for ‘select’
Tab6_ANOVA_Server : <anonymous>: no visible binding for global variable
‘Adj_Pval’
Tab6_Association_Tests_UI: no visible global function definition for
‘NS’
Tab6_Association_Tests_UI: no visible global function definition for
‘box’
Tab6_Association_Tests_UI: no visible global function definition for
‘boxDropdown’
Tab6_Association_Tests_UI: no visible global function definition for
‘boxDropdownItem’
Tab6_Association_Tests_UI: no visible global function definition for
‘HTML’
Tab6_Association_Tests_UI: no visible global function definition for
‘boxSidebar’
Tab6_Association_Tests_UI: no visible global function definition for
‘selectInput’
Tab6_Association_Tests_UI: no visible global function definition for
‘conditionalPanel’
Tab6_Association_Tests_UI: no visible global function definition for
‘selectizeInput’
Tab6_Association_Tests_UI: no visible global function definition for
‘h4’
Tab6_Association_Tests_UI: no visible global function definition for
‘strong’
Tab6_Association_Tests_UI: no visible global function definition for
‘verbatimTextOutput’
Tab6_Association_Tests_UI: no visible global function definition for
‘br’
Tab6_Association_Tests_UI: no visible global function definition for
‘h5’
Tab6_Association_Tests_UI: no visible global function definition for
‘div’
Tab6_CG_Server: no visible global function definition for
‘moduleServer’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘observe’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘updateSelectizeInput’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘metaReactive2’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘need’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘metaExpr’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘..’
Tab6_CG_Server : <anonymous>: no visible global function definition for
‘metaRender’
Tab6_CG_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_Chi_Square_Server: no visible global function definition for
‘moduleServer’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘..’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘need’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab6_Chi_Square_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘%!in%’
Tab6_Chi_Square_Server : <anonymous>: no visible global function
definition for ‘select’
Tab6_Chi_Square_Server : <anonymous>: no visible binding for global
variable ‘Adj_Pval’
Tab6_FE_Server: no visible global function definition for
‘moduleServer’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘observe’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘updateSelectizeInput’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘metaReactive2’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘metaExpr’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘..’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘need’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘metaRender’
Tab6_FE_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_FE_Server : <anonymous>: no visible global function definition for
‘select’
Tab6_FE_Server : <anonymous>: no visible binding for global variable
‘Adj_Pval’
Tab6_FE_Sim_Server: no visible global function definition for
‘moduleServer’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘..’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘need’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab6_FE_Sim_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab6_FE_Sim_Server : <anonymous>: no visible global function definition
for ‘select’
Tab6_FE_Sim_Server : <anonymous>: no visible binding for global
variable ‘Adj_Pval’
Tab6_KW_Server: no visible global function definition for
‘moduleServer’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘observe’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘updateSelectizeInput’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘metaReactive2’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘need’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘metaExpr’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘..’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘metaRender’
Tab6_KW_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab6_KW_Server : <anonymous>: no visible global function definition for
‘select’
Tab6_KW_Server : <anonymous>: no visible binding for global variable
‘Adj_Pval’
Tab6_PWC_Server: no visible global function definition for
‘moduleServer’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘observe’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘updateSelectizeInput’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘metaReactive2’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘need’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘metaExpr’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘..’
Tab6_PWC_Server : <anonymous>: no visible global function definition
for ‘metaRender’
Tab6_PWC_Server : <anonymous>: no visible binding for global variable
‘renderPrint’
Tab7_Assumption_CoxPH: no visible global function definition for ‘NS’
Tab7_Assumption_CoxPH: no visible global function definition for
‘fluidRow’
Tab7_Assumption_CoxPH: no visible global function definition for ‘box’
Tab7_Assumption_CoxPH: no visible global function definition for
‘boxDropdown’
Tab7_Assumption_CoxPH: no visible global function definition for
‘boxDropdownItem’
Tab7_Assumption_CoxPH: no visible global function definition for ‘HTML’
Tab7_Assumption_CoxPH: no visible global function definition for
‘boxSidebar’
Tab7_Assumption_CoxPH: no visible global function definition for ‘h5’
Tab7_Assumption_CoxPH: no visible global function definition for
‘strong’
Tab7_Assumption_CoxPH: no visible global function definition for
‘prettyToggle’
Tab7_Assumption_CoxPH: no visible global function definition for
‘numericInput’
Tab7_Assumption_CoxPH: no visible global function definition for
‘downloadButton’
Tab7_Assumption_CoxPH: no visible global function definition for ‘br’
Tab7_Assumption_CoxPH: no visible global function definition for
‘plotOutput’
Tab7_Multi_Cox_Server: no visible global function definition for
‘moduleServer’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘need’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘%!in%’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘..’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘select’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab7_Multi_Cox_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab7_Multi_Cox_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab7_Multi_Cox_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab7_Multivariate_CoxPH: no visible global function definition for ‘NS’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘fluidRow’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘box’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘boxDropdown’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘boxDropdownItem’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘HTML’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘verbatimTextOutput’
Tab7_Multivariate_CoxPH: no visible global function definition for ‘h5’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘strong’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘boxSidebar’
Tab7_Multivariate_CoxPH: no visible global function definition for
‘selectizeInput’
Tab7_Uni_Cox_Server: no visible global function definition for
‘moduleServer’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘..’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘select’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘need’
Tab7_Uni_Cox_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘Adj_LRT’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘Adj_Wald’
Tab7_Uni_Cox_Server : <anonymous>: no visible binding for global
variable ‘Adj_Logrank’
Tab7_Univariate_CoxPH: no visible global function definition for ‘NS’
Tab7_Univariate_CoxPH: no visible global function definition for
‘fluidRow’
Tab7_Univariate_CoxPH: no visible global function definition for ‘box’
Tab7_Univariate_CoxPH: no visible global function definition for
‘boxDropdown’
Tab7_Univariate_CoxPH: no visible global function definition for
‘boxDropdownItem’
Tab7_Univariate_CoxPH: no visible global function definition for ‘HTML’
Tab7_Univariate_CoxPH: no visible global function definition for
‘verbatimTextOutput’
Tab7_Univariate_CoxPH: no visible global function definition for ‘br’
Tab7_Univariate_CoxPH: no visible global function definition for ‘h4’
Tab7_Univariate_CoxPH: no visible global function definition for
‘strong’
Tab7_Univariate_CoxPH: no visible global function definition for
‘boxSidebar’
Tab7_Univariate_CoxPH: no visible global function definition for
‘selectizeInput’
Tab8_Adjusted_Survival_Curves_Server: no visible global function
definition for ‘moduleServer’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘metaRender’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible binding
for global variable ‘renderPrint’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘..’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘observe’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘updateSelectizeInput’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘metaReactive2’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘need’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘metaExpr’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘mutate’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘:=’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘select’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘updateSelectInput’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘theme_bw’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘theme’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘element_text’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘ggplot’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible global
function definition for ‘theme_void’
Tab8_Adjusted_Survival_Curves_Server : <anonymous>: no visible binding
for global variable ‘renderPlot’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘NS’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘fluidRow’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘box’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘verbatimTextOutput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘boxDropdown’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘boxDropdownItem’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘HTML’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘boxSidebar’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘selectizeInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘plotOutput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘selectInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘h5’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘strong’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘prettyToggle’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘textInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘numericInput’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘downloadButton’
Tab8_Adjusted_Survival_Curves_UI: no visible global function definition
for ‘br’
Tab9_Ctree_UI: no visible global function definition for ‘NS’
Tab9_Ctree_UI: no visible global function definition for ‘fluidRow’
Tab9_Ctree_UI: no visible global function definition for ‘box’
Tab9_Ctree_UI: no visible global function definition for ‘plotOutput’
Tab9_Ctree_UI: no visible global function definition for ‘boxDropdown’
Tab9_Ctree_UI: no visible global function definition for
‘boxDropdownItem’
Tab9_Ctree_UI: no visible global function definition for ‘HTML’
Tab9_Ctree_UI: no visible global function definition for ‘boxSidebar’
Tab9_Ctree_UI: no visible global function definition for
‘selectizeInput’
Tab9_Ctree_UI: no visible global function definition for ‘prettyToggle’
Tab9_Ctree_UI: no visible global function definition for ‘selectInput’
Tab9_Ctree_UI: no visible global function definition for ‘sliderInput’
Tab9_Ctree_UI: no visible global function definition for ‘numericInput’
Tab9_Ctree_UI: no visible global function definition for
‘downloadButton’
Tab9_Ctree_UI: no visible global function definition for ‘br’
Tab9_Ctree_UI: no visible global function definition for ‘h5’
Tab9_Ctree_UI: no visible global function definition for ‘strong’
Tab9_Ctree_UI: no visible global function definition for ‘textInput’
Tab9_RPST_Ctree_Server: no visible global function definition for
‘moduleServer’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘..’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘.’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘need’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘select’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘Time’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘Node’
Tab9_RPST_Ctree_Server : <anonymous>: no visible binding for global
variable ‘Cen’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab9_RPST_Ctree_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab9_RPST_Rpart_Server: no visible global function definition for
‘moduleServer’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘observe’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘updateSelectizeInput’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘metaReactive2’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘metaExpr’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘..’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘metaRender’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘renderPrint’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘.’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘need’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘ggplot’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘theme_void’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘renderPlot’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘mutate’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘select’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘Time’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘Node’
Tab9_RPST_Rpart_Server : <anonymous>: no visible binding for global
variable ‘Cen’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘theme_bw’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘theme’
Tab9_RPST_Rpart_Server : <anonymous>: no visible global function
definition for ‘element_text’
Tab9_Rpart_UI: no visible global function definition for ‘NS’
Tab9_Rpart_UI: no visible global function definition for ‘fluidRow’
Tab9_Rpart_UI: no visible global function definition for ‘box’
Tab9_Rpart_UI: no visible global function definition for ‘plotOutput’
Tab9_Rpart_UI: no visible global function definition for ‘boxDropdown’
Tab9_Rpart_UI: no visible global function definition for
‘boxDropdownItem’
Tab9_Rpart_UI: no visible global function definition for ‘HTML’
Tab9_Rpart_UI: no visible global function definition for ‘boxSidebar’
Tab9_Rpart_UI: no visible global function definition for
‘selectizeInput’
Tab9_Rpart_UI: no visible global function definition for ‘sliderInput’
Tab9_Rpart_UI: no visible global function definition for ‘numericInput’
Tab9_Rpart_UI: no visible global function definition for
‘downloadButton’
Tab9_Rpart_UI: no visible global function definition for ‘br’
Tab9_Rpart_UI: no visible global function definition for ‘h5’
Tab9_Rpart_UI: no visible global function definition for ‘strong’
Tab9_Rpart_UI: no visible global function definition for ‘prettyToggle’
Tab9_Rpart_UI: no visible global function definition for ‘selectInput’
Tab9_Rpart_UI: no visible global function definition for ‘textInput’
Undefined global functions or variables:
%!in% . .. ..density.. := Adj_LRT Adj_Logrank Adj_Pval Adj_Wald
Binding Cen HTML Hugo_Symbol NS Name Node PATIENT_ID Tab
Tab10_Summary_Plot_Fraction Tab10_TT_Plot_Width Time Timestamp Value
aes all_of arrange_at as_tibble awesomeCheckboxGroup awesomeRadio
binding box boxDropdown boxDropdownItem boxSidebar br
colorRampPalette column conditionalPanel dashboardBody
dashboardHeader dashboardPage dashboardSidebar dev.off div
downloadButton downloadHandler element_text facet_wrap fileInput
fluidRow geom_bar geom_boxplot geom_density geom_histogram
geom_jitter geom_line geom_point geom_ribbon getClinicalData
getFields getGeneSummary getSampleSummary ggplot ggtitle group_by
guides h4 h5 icon includeCSS labs lollipopPlot menuItem menuSubItem
metaExpr metaReactive2 metaRender moduleServer mutate mutate_at
mutate_if name need numericInput observe oncoplot oncostrip
plotOutput plotTiTv plotmafSummary png prettyToggle quant reactive
read.delim read.maf rename renderPlot renderPrint req
scale_color_discrete scale_color_manual scale_colour_discrete
scale_fill_discrete scale_fill_manual scale_x_continuous
scale_x_discrete select selectInput selectizeInput shinyApp
shinyDashboardThemes sidebarMenu sliderInput somaticInteractions span
stat_summary str_split str_to_title strong svg tabBox tabItem
tabItems tabPanel tagList tcgaCompare textInput textOutput theme
theme_bw theme_void timestamp titv type unit updateSelectInput
updateSelectizeInput value verbatimTextOutput write.table x xlab xlim
y ylab
Consider adding
importFrom("grDevices", "colorRampPalette", "dev.off", "png", "svg")
importFrom("graphics", "box")
importFrom("utils", "read.delim", "timestamp", "write.table")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [4s/4s] OK
* DONE
Status: 3 NOTEs
See
‘/Users/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.Rcheck/00check.log’
for details.
===============================
BiocCheck('GNOSIS_0.99.0.tar.gz')
===============================
─ BiocCheckVersion: 1.37.14
─ BiocVersion: 3.18
─ Package: GNOSIS
─ PackageVersion: 0.99.0
─ sourceDir: /var/folders/db/d7_0z9ss4n3692ppdmx9hlgr0000gv/T//RtmpK9j3wO/file99394de01f3/GNOSIS
─ installDir: /var/folders/db/d7_0z9ss4n3692ppdmx9hlgr0000gv/T//RtmpK9j3wO/file99393336c96a
─ BiocCheckDir: /Users/pkgbuild/packagebuilder/workers/jobs/3132/GNOSIS_20230914150227/GNOSIS.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* ERROR: Package tarball exceeds the Bioconductor size requirement.
* Checking individual file sizes...
* WARNING: Package files exceed the 5MB size limit.
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* NOTE: Consider adding these automatically suggested biocViews:
Sequencing, Classification, DNASeq, FunctionalGenomics,
DriverMutation, SomaticMutation, VariantAnnotation,
FeatureExtraction
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* Checking for recommeded fields in DESCRIPTION...
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of GNOSIS...
* Checking coding practice...
* NOTE: Avoid 1:...; use seq_len() or seq_along()
* NOTE: Avoid 'cat' and 'print' outside of 'show' methods
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
are 83 functions greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 1171 lines (7%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 18 lines
(0%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
1 ERRORS | 1 WARNINGS | 7 NOTES
See the GNOSIS.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
lconway BUILD BIN output
[top]
===============================
R CMD BUILD
===============================
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=libdir GNOSIS_0.99.0.tar.gz'
>>>>>>>
* installing *source* package ‘GNOSIS’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GNOSIS)