Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/TSAR
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 22.04.2 LTS)/x86_64   ERROR     skipped     skipped     skipped  
lconway macOS 12.6.5 Monterey/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: TSAR
Version: 0.99.7
RVersion: 4.3
BiocVersion: 3.18
BuildCommand: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TSAR
BuildTime: 0 minutes 37.64 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: TSAR_20230925223305
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: TSAR. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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 R CMD BUILD

===============================

* checking for file ‘TSAR/DESCRIPTION’ ... OK
* preparing ‘TSAR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FAQ_assistance.Rmd’ using rmarkdown
--- finished re-building ‘FAQ_assistance.Rmd’

--- re-building ‘TSAR_Package_Structure.Rmd’ using rmarkdown

Quitting from lines 315-319 [unnamed-chunk-15] (TSAR_Package_Structure.Rmd)
Error: processing vignette 'TSAR_Package_Structure.Rmd' failed with diagnostics:
'arg' should be one of "Protein", "Ligan", "NA"
--- failed re-building ‘TSAR_Package_Structure.Rmd’

--- re-building ‘TSAR_Workflow_by_Command.Rmd’ using rmarkdown

Quitting from lines 248-257 [unnamed-chunk-16] (TSAR_Workflow_by_Command.Rmd)
Error: processing vignette 'TSAR_Workflow_by_Command.Rmd' failed with diagnostics:
'arg' should be one of "Protein", "Ligan", "NA"
--- failed re-building ‘TSAR_Workflow_by_Command.Rmd’

--- re-building ‘TSAR_Workflow_by_Shiny.Rmd’ using rmarkdown
--- finished re-building ‘TSAR_Workflow_by_Shiny.Rmd’

SUMMARY: processing the following files failed:
  ‘TSAR_Package_Structure.Rmd’ ‘TSAR_Workflow_by_Command.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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lconway Summary
 
                			
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Package: TSAR
 
                					
Version: 0.99.7
 
                					
RVersion: 4.3
                
 
                					
BiocVersion: 3.18
                
 

                					
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TSAR
 
                					
BuildTime: 0 minutes 25.86 seconds
 
                					
CheckCommand: 

   							
CheckTime: 

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: -1.00 KiB
 
                					
BuildID:: TSAR_20230925223305
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: TSAR. Starting Build package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1. 
        				
                				
 
                			
 
                			
 
                			    
                				
lconway BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘TSAR/DESCRIPTION’ ... OK
* preparing ‘TSAR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FAQ_assistance.Rmd’ using rmarkdown
--- finished re-building ‘FAQ_assistance.Rmd’

--- re-building ‘TSAR_Package_Structure.Rmd’ using rmarkdown

Quitting from lines 315-319 [unnamed-chunk-15] (TSAR_Package_Structure.Rmd)
Error: processing vignette 'TSAR_Package_Structure.Rmd' failed with diagnostics:
'arg' should be one of "Protein", "Ligan", "NA"
--- failed re-building ‘TSAR_Package_Structure.Rmd’

--- re-building ‘TSAR_Workflow_by_Command.Rmd’ using rmarkdown

Quitting from lines 248-257 [unnamed-chunk-16] (TSAR_Workflow_by_Command.Rmd)
Error: processing vignette 'TSAR_Workflow_by_Command.Rmd' failed with diagnostics:
'arg' should be one of "Protein", "Ligan", "NA"
--- failed re-building ‘TSAR_Workflow_by_Command.Rmd’

--- re-building ‘TSAR_Workflow_by_Shiny.Rmd’ using rmarkdown
--- finished re-building ‘TSAR_Workflow_by_Shiny.Rmd’

SUMMARY: processing the following files failed:
  ‘TSAR_Package_Structure.Rmd’ ‘TSAR_Workflow_by_Command.Rmd’

Error: Vignette re-building failed.
Execution halted


                				
 

                			
 
                			    
                				
lconway CHECK output
 
                    			
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lconway BUILD BIN output
 
                    			
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