Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/methodical
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
lconway macOS 12.6.5 Monterey/x86_64   ERROR     skipped     skipped     skipped  
nebbiolo2 Linux (Ubuntu 22.04.2 LTS)/x86_64   OK     WARNINGS     skipped     OK  

lconway Summary

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Package: methodical
Version: 0.99.8
RVersion: 4.3
BiocVersion: 3.18
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
BuildTime: 0 minutes 49.59 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: methodical_20231020150059
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: methodical. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

lconway BUILD SRC output

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 R CMD BUILD

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* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown

Quitting from lines 40-46 [unnamed-chunk-2] (calculating_methylation_transcription_correlations.Rmd)
Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics:
failed to connect
  reason: Timeout was reached: [bioconductor.org] SSL connection timeout
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘calculating_methylation_transcription_correlations.Rmd’

--- re-building ‘identifying_tmrs.Rmd’ using rmarkdown
--- finished re-building ‘identifying_tmrs.Rmd’

SUMMARY: processing the following file failed:
  ‘calculating_methylation_transcription_correlations.Rmd’

Error: Vignette re-building failed.
Execution halted

lconway CHECK output

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lconway BUILD BIN output
 
                    			
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nebbiolo2 Summary
 
                			
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Package: methodical
 
                					
Version: 0.99.8
 
                					
RVersion: 4.3
                
 
                					
BiocVersion: 3.18
                
 

                					
BuildCommand: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data methodical
 
                					
BuildTime: 8 minutes 28.68 seconds
 
                					
CheckCommand: BiocCheckGitClone('methodical')  &&  /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/3169/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/3169/addad7d46f9bcbc5362e573eb96f8c54caeaefd3/methodical.install-out.txt  methodical_0.99.8.tar.gz  &&  BiocCheck('methodical_0.99.8.tar.gz',  `new-package`=TRUE)

   							
CheckTime: 9 minutes 2.08 seconds

                 					
BuildBinCommand: 

 							
BuildBinTime: 

                					
PackageFileSize: 4403.17 KiB
 
                					
BuildID:: methodical_20231020150059
 
                					
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: methodical. Starting Build package. Starting Check package. 
 
                					
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 0. 
        				
                				
 
                			
 
                			
 
                			    
                				
nebbiolo2 BUILD SRC output
 
                    			
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===============================

 R CMD BUILD

===============================

* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘methodical_0.99.8.tar.gz’



                				
 

                			
 
                			    
                				
nebbiolo2 CHECK output
 
                    			
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===============================

 BiocCheckGitClone('methodical')

===============================

─ BiocCheckVersion: 1.37.16
─ BiocVersion: 3.18
─ Package: methodical
─ PackageVersion: 0.99.8
─ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3169/addad7d46f9bcbc5362e573eb96f8c54caeaefd3/methodical
─ platform: unix
─ isTarBall: FALSE

* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...

─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES

For more details, run
    browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

===============================

* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/3169/addad7d46f9bcbc5362e573eb96f8c54caeaefd3/methodical.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04.1) 11.3.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘methodical/DESCRIPTION’ ... OK
* this is package ‘methodical’ version ‘0.99.8’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘methodical’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [7s/7s] OK
* checking whether the package can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the package can be unloaded cleanly ... [8s/8s] OK
* checking whether the namespace can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/7s] OK
* checking loading without being on the library search path ... [7s/7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Unexported object imported by a ':::' call: ‘HDF5Array:::.serialize_HDF5SummarizedExperiment’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [27s/27s] NOTE
.calculate_regions_intersections: no visible global function definition
  for ‘is’
.chunk_regions: no visible global function definition for ‘is’
.chunk_regions: no visible global function definition for
  ‘subsetByOverlaps’
.count_covered_bases: no visible global function definition for ‘is’
.create_meth_rse_from_hdf5: no visible global function definition for
  ‘setNames’
.split_bedgraphs_into_chunks: no visible global function definition for
  ‘%dopar%’
.split_bedgraphs_into_chunks: no visible binding for global variable
  ‘column’
.split_bedgraphs_into_chunks: no visible binding for global variable
  ‘file_count’
.split_bedgraphs_into_chunks: no visible binding for global variable
  ‘bg_file’
.split_bedgraphs_into_chunks: no visible global function definition for
  ‘setNames’
.split_bedgraphs_into_chunks: no visible global function definition for
  ‘%do%’
.split_bedgraphs_into_chunks: no visible binding for global variable
  ‘mg’
.split_meth_array_files_into_chunks: no visible binding for global
  variable ‘name’
.split_meth_array_files_into_chunks: no visible global function
  definition for ‘%dopar%’
.split_meth_array_files_into_chunks: no visible binding for global
  variable ‘column’
.split_meth_array_files_into_chunks: no visible binding for global
  variable ‘file_count’
.split_meth_array_files_into_chunks: no visible global function
  definition for ‘setNames’
.split_meth_array_files_into_chunks: no visible global function
  definition for ‘%do%’
.split_meth_array_files_into_chunks: no visible binding for global
  variable ‘pg’
.write_chunks_to_hdf5: no visible binding for global variable ‘chunk’
SampleMethSites: no visible global function definition for ‘is’
annotateGRanges: no visible global function definition for ‘is’
annotateMethSitePlot: no visible global function definition for ‘is’
annotateMethSitePlot: no visible global function definition for
  ‘subsetByOverlaps’
annotateMethSitePlot: no visible global function definition for
  ‘setNames’
annotateMethSitePlot: no visible global function definition for
  ‘colorRampPalette’
annotateMethSitePlot: no visible binding for global variable
  ‘region_type’
calculateMethSiteTranscriptCors: no visible global function definition
  for ‘is’
calculateMethSiteTranscriptCors: no visible global function definition
  for ‘%do%’
calculateMethSiteTranscriptCors: no visible binding for global variable
  ‘chunk’
calculateMethSiteTranscriptCors: no visible global function definition
  for ‘subsetByOverlaps’
calculateMethSiteTranscriptCors: no visible global function definition
  for ‘%dopar%’
calculateMethSiteTranscriptCors: no visible global function definition
  for ‘setNames’
calculateMethSiteTranscriptCors: no visible binding for global variable
  ‘transcript_name’
calculateMethSiteTranscriptCors: no visible binding for global variable
  ‘transcript_tss’
calculateRegionMethylationTranscriptCors: no visible global function
  definition for ‘is’
calculateRegionMethylationTranscriptCors: no visible binding for global
  variable ‘p.adjust.methods’
calculateRegionMethylationTranscriptCors: no visible binding for global
  variable ‘transcript’
calculateRegionMethylationTranscriptCors: no visible global function
  definition for ‘setNames’
calculateRegionMethylationTranscriptCors: no visible global function
  definition for ‘p.adjust’
calculateSmoothedMethodicalScores: no visible global function
  definition for ‘is’
createRandomRegions: no visible global function definition for ‘is’
createRandomRegions: no visible global function definition for
  ‘seqlengths’
createRandomRegions: no visible global function definition for
  ‘overlapsAny’
downloadMethDataset: no visible global function definition for ‘data’
downloadMethDataset: no visible binding for global variable
  ‘TumourMethDatasets’
extractGRangesMethSiteValues: no visible global function definition for
  ‘is’
extractMethSitesFromGenome: no visible global function definition for
  ‘is’
find_TMRs: no visible global function definition for ‘is’
kallistoIndex: no visible global function definition for ‘is’
kallistoQuantify: no visible global function definition for ‘is’
kallistoQuantify: no visible global function definition for ‘setNames’
liftoverMethRSE: no visible global function definition for ‘is’
makeMethRSEFromArrayFiles: no visible global function definition for
  ‘is’
makeMethRSEFromBedgraphs: no visible global function definition for
  ‘is’
maskRangesInRSE: no visible global function definition for ‘is’
maskRangesInRSE: no visible global function definition for ‘queryHits’
methrixToRSE: no visible global function definition for ‘is’
plotMethSiteValues: no visible global function definition for ‘is’
plotMethSiteValues: no visible global function definition for
  ‘complete.cases’
plotMethSiteValues: no visible binding for global variable
  ‘meth_site_plot_position’
plotMethodicalScores: no visible global function definition for ‘is’
plotMethodicalScores: no visible global function definition for
  ‘seqlevels’
plotMethodicalScores: no visible binding for global variable
  ‘meth_site_start’
plotMethodicalScores: no visible binding for global variable
  ‘meth_site_plot_position’
plotMethodicalScores: no visible binding for global variable
  ‘methodical_score’
plotMethodicalScores: no visible binding for global variable ‘cor’
plotTMRs: no visible global function definition for ‘is’
plotTMRs: no visible binding for global variable ‘direction’
plotTMRs: no visible global function definition for ‘setNames’
rangesRelativeToTSS: no visible global function definition for ‘is’
rapidCorTest: no visible global function definition for ‘is’
rapidCorTest: no visible binding for global variable ‘p.adjust.methods’
rapidCorTest: no visible global function definition for ‘cor’
rapidCorTest: no visible global function definition for ‘pt’
rapidCorTest: no visible global function definition for ‘p.adjust’
strandedDistance: no visible global function definition for ‘is’
sumTranscriptValuesForGenes: no visible global function definition for
  ‘is’
sumTranscriptValuesForGenes : <anonymous>: no visible global function
  definition for ‘is’
sumTranscriptValuesForGenes: no visible binding for global variable
  ‘gene_transcripts’
summarizeRegionMethylation: no visible global function definition for
  ‘is’
summarizeRegionMethylation: no visible global function definition for
  ‘seqlevels’
summarizeRegionMethylation: no visible global function definition for
  ‘%dopar%’
summarizeRegionMethylation: no visible binding for global variable
  ‘chunk’
summarizeRegionMethylation: no visible global function definition for
  ‘subsetByOverlaps’
Undefined global functions or variables:
  %do% %dopar% TumourMethDatasets bg_file chunk colorRampPalette column
  complete.cases cor data direction file_count gene_transcripts is
  meth_site_plot_position meth_site_start methodical_score mg name
  overlapsAny p.adjust p.adjust.methods pg pt queryHits region_type
  seqlengths seqlevels setNames subsetByOverlaps transcript
  transcript_name transcript_tss
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("methods", "is")
  importFrom("stats", "complete.cases", "cor", "p.adjust",
             "p.adjust.methods", "pt", "setNames")
  importFrom("utils", "data")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').

Found the following calls to data() loading into the global environment:
File ‘methodical/R/download_datasets.R’:
  data("TumourMethDatasets", package = "methodical")
See section ‘Good practice’ in ‘?data’.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'SampleMethSites.Rd':
  \examples lines wider than 100 characters:
     random_cpgs <- methodical::SampleMethSites(tubb6_meth_rse, n_sites = 20, genomic_ranges_filter = mask_ranges, 

Rd file 'annotateMethSitePlot.Rd':
  \examples lines wider than 100 characters:
     methodical::annotateMethSitePlot(tubb6_correlation_plot, annotation_gr = cpg_island_annotation, annotation_plot_height = 0.3)

Rd file 'calculateMethSiteTranscriptCors.Rd':
  \examples lines wider than 100 characters:
     # Load TUBB6 TSS GRanges, RangedSummarizedExperiment with methylation values for CpGs around TUBB6 TSS and TUBB6 transcript counts
     tubb6_cpg_meth_transcript_cors <- methodical::calculateMethSiteTranscriptCors(meth_rse = tubb6_meth_rse, 
       transcript_expression_table = tubb6_transcript_counts, tss_gr = tubb6_tss, expand_upstream = 5000, expand_downstream = 5000)

Rd file 'calculateRegionMethylationTranscriptCors.Rd':
  \examples lines wider than 100 characters:
     # Load TUBB6 TMRs, RangedSummarizedExperiment with methylation values for CpGs around TUBB6 TSS and TUBB6 transcript counts
       genomic_regions = tubb6_tmrs, genomic_region_names = tubb6_tmrs$tmr_name, meth_rse = tubb6_meth_rse, transcript_expression_table = tu ... [TRUNCATED]

Rd file 'calculateSmoothedMethodicalScores.Rd':
  \examples lines wider than 100 characters:
     smoothed_methodical_scores <- methodical::calculateSmoothedMethodicalScores(tubb6_cpg_meth_transcript_cors)

Rd file 'createRandomRegions.Rd':
  \examples lines wider than 100 characters:
     random_regions <- methodical::createRandomRegions(genome = "BSgenome.Hsapiens.UCSC.hg38", n_regions = 10000)

Rd file 'extractGRangesMethSiteValues.Rd':
  \examples lines wider than 100 characters:
     test_region_methylation <- methodical::extractGRangesMethSiteValues(tubb6_meth_rse, genomic_regions = test_region)

Rd file 'extractMethSitesFromGenome.Rd':
  \examples lines wider than 100 characters:
     arabidopsis_cphpgs <- methodical::extractMethSitesFromGenome("BSgenome.Athaliana.TAIR.TAIR9", pattern = "CHG")

Rd file 'kallistoIndex.Rd':
  \examples lines wider than 100 characters:
     download.file("https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_44/gencode.v44.transcripts.fa.gz")

Rd file 'liftoverMethRSE.Rd':
  \examples lines wider than 100 characters:
     # Liftover tubb6_meth_rse from hg38 to hg19, keeping only sites that were mapped to CpG sites in hg19

Rd file 'plotMethSiteValues.Rd':
  \examples lines wider than 100 characters:
     methodical::plotMethSiteValues(tubb6_cpg_meth_transcript_cors, column_name = "cor", ylabel = "Spearman Correlation")
       ylabel = "Spearman Correlation", reference_tss = attributes(tubb6_cpg_meth_transcript_cors)$tss_range)

Rd file 'plotMethodicalScores.Rd':
  \examples lines wider than 100 characters:
     methodical::plotMethodicalScores(tubb6_cpg_meth_transcript_cors, reference_tss = attributes(tubb6_cpg_meth_transcript_cors)$tss_range)

Rd file 'plotTMRs.Rd':
  \examples lines wider than 100 characters:
     tubb6_correlation_plot <- methodical::plotMethSiteValues(tubb6_cpg_meth_transcript_cors, column_name = "cor", ylabel = "Spearman Correl ... [TRUNCATED]

Rd file 'summarizeRegionMethylation.Rd':
  \examples lines wider than 100 characters:
     test_gr <- GRanges(c("chr18:12303400-12303500", "chr18:12303600-12303750", "chr18:12304000-12306000"))
     test_gr_methylation <- methodical::summarizeRegionMethylation(tubb6_meth_rse, genomic_regions = test_gr,

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [8s/8s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [364s/358s] OK
Examples with CPU (user + system) or elapsed time > 5s
                                            user system elapsed
extractMethSitesFromGenome               126.490 11.441 139.248
liftoverMethRSE                          102.248  9.698 113.441
downloadMethDataset                       29.879  1.481  34.638
makeMethRSEFromArrayFiles                 20.763  0.842   9.680
annotateMethSitePlot                       7.386  0.448   8.148
makeMethRSEFromBedgraphs                   6.746  0.360   6.549
summarizeRegionMethylation                 5.077  0.088   5.165
calculateRegionMethylationTranscriptCors   4.875  0.243   5.118
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [3s/3s] OK
* DONE

Status: 3 NOTEs
See
  ‘/home/pkgbuild/packagebuilder/workers/jobs/3169/addad7d46f9bcbc5362e573eb96f8c54caeaefd3/methodical.Rcheck/00check.log’
for details.






===============================

 BiocCheck('methodical_0.99.8.tar.gz')

===============================

─ BiocCheckVersion: 1.37.16
─ BiocVersion: 3.18
─ Package: methodical
─ PackageVersion: 0.99.8
─ sourceDir: /tmp/Rtmpn9fGyL/fileb0f4766190096/methodical
─ installDir: /tmp/Rtmpn9fGyL/fileb0f47953832d
─ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3169/addad7d46f9bcbc5362e573eb96f8c54caeaefd3/methodical.BiocCheck
─ platform: unix
─ isTarBall: TRUE

* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
    * NOTE: Update R version dependency from 4.0 to 4.3.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
    Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
    * NOTE: Consider adding these automatically suggested biocViews:
      Sequencing, Coverage, GenomeWideAssociation
Search 'biocViews' at https://contributions.bioconductor.org
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
    * NOTE: License 'GPL (>= 3)' unknown; licenses cannot restrict use
* Checking for recommeded fields in DESCRIPTION...
    * NOTE: Provide 'URL' field(s) in DESCRIPTION
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of methodical...
    * WARNING: Avoid the use of 'library' or 'require' in R code
* Checking coding practice...
    * NOTE: Avoid sapply(); use vapply()
    * NOTE: Avoid 1:...; use seq_len() or seq_along()
    * NOTE: Avoid 'cat' and 'print' outside of 'show' methods
    * NOTE: Avoid using '=' for assignment and use '<-' instead
    * NOTE: Avoid the use of 'paste' in condition signals
* Checking parsed R code in R directory, examples, vignettes...
    * NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 4
      times)
* Checking function lengths...
    * NOTE: The recommended function length is 50 lines or less. There
      are 17 functions greater than 50 lines.
* Checking man page documentation...
    * NOTE: Consider adding runnable examples to man pages that
      document exported objects.
    * NOTE: Usage of dontrun{} / donttest{} tags found in man page
      examples. 2% of man pages use at least one of these tags.
    * NOTE: Use donttest{} instead of dontrun{}.
* Checking package NEWS...
* Checking unit tests...
    * NOTE: Consider adding unit tests. We strongly encourage them. See
      https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
  and vignette source...
    * NOTE: Consider shorter lines; 1137 lines (21%) are > 80
      characters long.
    * NOTE: Consider multiples of 4 spaces for line indents; 1706 lines
      (32%) are not.
    See https://contributions.bioconductor.org/r-code.html
    See styler package: https://cran.r-project.org/package=styler as
      described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
    Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
    Maintainer is registered at support site.
    Package name is in support site watched tags.

─ BiocCheck results ──
0 ERRORS | 1 WARNINGS | 17 NOTES

See the methodical.BiocCheck folder and run
    browseVignettes(package = 'BiocCheck')
for details.


                				
 

                            
 
                                
                				
nebbiolo2 BUILD BIN output
 
                    			
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