lconway Summary
[top]
Package: Banksy |
Version: 0.99.1 |
RVersion: 4.3
|
BiocVersion: 3.18
|
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Banksy |
BuildTime: 0 minutes 56.97 seconds |
CheckCommand: BiocCheckGitClone('Banksy') && /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --library=/Users/pkgbuild/packagebuilder/workers/jobs/3201/R-libs --install=check:/Users/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.install-out.txt Banksy_0.99.1.tar.gz && BiocCheck('Banksy_0.99.1.tar.gz', `new-package`=TRUE) |
CheckTime: 2 minutes 30.00 seconds |
BuildBinCommand: /Users/biocbuild/BBS/utils/build-universal.sh Banksy_0.99.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R libdir |
BuildBinTime: 0 minutes 17.43 seconds |
PackageFileSize: 3677.85 KiB |
BuildID:: Banksy_20231113145633 |
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: Banksy. Starting Build package. Starting Check package. Starting Build package. |
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 1. Build Package status: 0. |
lconway BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘Banksy/DESCRIPTION’ ... OK
* preparing ‘Banksy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘Banksy_0.99.1.tar.gz’
lconway CHECK output
[top]
===============================
BiocCheckGitClone('Banksy')
===============================
─ BiocCheckVersion: 1.39.0
─ BiocVersion: 3.18
─ Package: Banksy
─ PackageVersion: 0.99.1
─ sourceDir: /Users/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/Users/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.Rcheck’
* using R version 4.3.2 Patched (2023-11-01 r85457)
* using platform: x86_64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.3 (clang-1403.0.22.14.1)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Banksy/DESCRIPTION’ ... OK
* this is package ‘Banksy’ version ‘0.99.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Banksy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/5s] OK
* checking whether the package can be loaded with stated dependencies ... [5s/5s] OK
* checking whether the package can be unloaded cleanly ... [5s/5s] OK
* checking whether the namespace can be loaded with stated dependencies ... [5s/5s] OK
* checking whether the namespace can be unloaded cleanly ... [5s/5s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking startup messages can be suppressed ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s/18s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [5s/5s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [11s/11s] ERROR
Running examples in ‘Banksy-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: runBanksyUMAP
> ### Title: Run UMAP on a BANKSY embedding.
> ### Aliases: runBanksyUMAP
>
> ### ** Examples
>
> data(rings)
> spe <- computeBanksy(rings, assay_name = "counts", M = 1, k_geom = c(15, 30))
Computing neighbors...
Spatial mode is kNN_median
Parameters: k_geom=15
Done
Computing neighbors...
Spatial mode is kNN_median
Parameters: k_geom=30
Done
Computing harmonic m = 0
Using 15 neighbors
Done
Computing harmonic m = 1
Using 30 neighbors
Centering
Done
> spe <- runBanksyPCA(spe, M = 1, lambda = 0.2, npcs = 20)
> spe <- runBanksyUMAP(spe, M = 1, lambda = 0.2)
Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters) :
function 'as_cholmod_sparse' not provided by package 'Matrix'
Calls: runBanksyUMAP ... irlba_tsvd_normalized_laplacian_init -> irlba_spectral_tsvd
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [12s/12s]
[12s/12s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 20 lines of output:
▆
1. ├─testthat::expect_message(runBanksyUMAP(spe, use_pcs = TRUE, seed = 1000)) at test-reduction.R:43:5
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─Banksy::runBanksyUMAP(spe, use_pcs = TRUE, seed = 1000)
8. └─base::mapply(...)
9. └─Banksy (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
10. └─uwot::umap(...)
11. └─uwot:::uwot(...)
12. └─uwot:::spectral_init(V, ndim = n_components, verbose = verbose)
13. └─uwot:::irlba_tsvd_normalized_laplacian_init(A, ndim, verbose = FALSE)
14. └─uwot:::irlba_spectral_tsvd(L, ndim + 1)
15. ├─base::suppressWarnings(...)
16. │ └─base::withCallingHandlers(...)
17. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 67 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [4s/4s] OK
* DONE
Status: 2 ERRORs
See
‘/Users/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.Rcheck/00check.log’
for details.
===============================
BiocCheck('Banksy_0.99.1.tar.gz')
===============================
─ BiocCheckVersion: 1.39.0
─ BiocVersion: 3.18
─ Package: Banksy
─ PackageVersion: 0.99.1
─ sourceDir: /tmp/RtmpM9vv2l/file5fb15abc5d63/Banksy
─ installDir: /tmp/RtmpM9vv2l/file5fb1652dc093
─ BiocCheckDir: /Users/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* NOTE: Update R version dependency from 3.5.0 to 4.3.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* NOTE: License 'file LICENSE' unknown; licenses cannot restrict
use
* Checking for recommeded fields in DESCRIPTION...
* NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* WARNING: Evaluate more vignette chunks.
37 out of 54 code chunks = 68% unevaluated
0 non-exec code chunk(s) (e.g., '```r')
* NOTE: 'sessionInfo' not found in vignette(s)
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of Banksy...
* Checking coding practice...
* WARNING: Remove set.seed usage (found 1 times)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
are 5 functions greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 31 lines (1%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 192 lines
(6%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
0 ERRORS | 2 WARNINGS | 7 NOTES
See the Banksy.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
lconway BUILD BIN output
[top]
===============================
R CMD BUILD
===============================
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=libdir Banksy_0.99.1.tar.gz'
>>>>>>>
* installing *source* package ‘Banksy’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Banksy)
nebbiolo2 Summary
[top]
Package: Banksy |
Version: 0.99.1 |
RVersion: 4.3
|
BiocVersion: 3.18
|
BuildCommand: /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Banksy |
BuildTime: 1 minutes 23.20 seconds |
CheckCommand: BiocCheckGitClone('Banksy') && /home/biocbuild/bbs-3.18-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/3201/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.install-out.txt Banksy_0.99.1.tar.gz && BiocCheck('Banksy_0.99.1.tar.gz', `new-package`=TRUE) |
CheckTime: 3 minutes 17.42 seconds |
BuildBinCommand: |
BuildBinTime: |
PackageFileSize: 3677.93 KiB |
BuildID:: Banksy_20231113145633 |
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: Banksy. Starting Build package. Starting Check package. |
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 1. |
nebbiolo2 BUILD SRC output
[top]
===============================
R CMD BUILD
===============================
* checking for file ‘Banksy/DESCRIPTION’ ... OK
* preparing ‘Banksy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘Banksy_0.99.1.tar.gz’
nebbiolo2 CHECK output
[top]
===============================
BiocCheckGitClone('Banksy')
===============================
─ BiocCheckVersion: 1.39.0
─ BiocVersion: 3.18
─ Package: Banksy
─ PackageVersion: 0.99.1
─ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy
─ platform: unix
─ isTarBall: FALSE
* Checking valid files...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
─ BiocCheck results ──
0 ERRORS | 0 WARNINGS | 0 NOTES
For more details, run
browseVignettes(package = 'BiocCheck')
===============================
R CMD CHECK
===============================
* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.Rcheck’
* using R version 4.3.2 (2023-10-31)
* using platform: x86_64-pc-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Banksy/DESCRIPTION’ ... OK
* this is package ‘Banksy’ version ‘0.99.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Banksy’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [7s/7s] OK
* checking whether the package can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the package can be unloaded cleanly ... [6s/6s] OK
* checking whether the namespace can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/7s] OK
* checking loading without being on the library search path ... [7s/7s] OK
* checking startup messages can be suppressed ... [7s/7s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [24s/24s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [6s/6s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [19s/15s] ERROR
Running examples in ‘Banksy-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: runBanksyUMAP
> ### Title: Run UMAP on a BANKSY embedding.
> ### Aliases: runBanksyUMAP
>
> ### ** Examples
>
> data(rings)
> spe <- computeBanksy(rings, assay_name = "counts", M = 1, k_geom = c(15, 30))
Computing neighbors...
Spatial mode is kNN_median
Parameters: k_geom=15
Done
Computing neighbors...
Spatial mode is kNN_median
Parameters: k_geom=30
Done
Computing harmonic m = 0
Using 15 neighbors
Done
Computing harmonic m = 1
Using 30 neighbors
Centering
Done
> spe <- runBanksyPCA(spe, M = 1, lambda = 0.2, npcs = 20)
> spe <- runBanksyUMAP(spe, M = 1, lambda = 0.2)
Error in irlba::irlba(L, nv = n, nu = 0, maxit = iters) :
function 'as_cholmod_sparse' not provided by package 'Matrix'
Calls: runBanksyUMAP ... irlba_tsvd_normalized_laplacian_init -> irlba_spectral_tsvd
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’ [22s/17s]
[22s/17s] ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 20 lines of output:
▆
1. ├─testthat::expect_message(runBanksyUMAP(spe, use_pcs = TRUE, seed = 1000)) at test-reduction.R:43:5
2. │ └─testthat:::expect_condition_matching(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─Banksy::runBanksyUMAP(spe, use_pcs = TRUE, seed = 1000)
8. └─base::mapply(...)
9. └─Banksy (local) `<fn>`(dots[[1L]][[1L]], dots[[2L]][[1L]])
10. └─uwot::umap(...)
11. └─uwot:::uwot(...)
12. └─uwot:::spectral_init(V, ndim = n_components, verbose = verbose)
13. └─uwot:::irlba_tsvd_normalized_laplacian_init(A, ndim, verbose = FALSE)
14. └─uwot:::irlba_spectral_tsvd(L, ndim + 1)
15. ├─base::suppressWarnings(...)
16. │ └─base::withCallingHandlers(...)
17. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters)
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 67 ]
Error: Test failures
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [3s/3s] OK
* DONE
Status: 2 ERRORs
See
‘/home/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.Rcheck/00check.log’
for details.
===============================
BiocCheck('Banksy_0.99.1.tar.gz')
===============================
─ BiocCheckVersion: 1.39.0
─ BiocVersion: 3.18
─ Package: Banksy
─ PackageVersion: 0.99.1
─ sourceDir: /tmp/RtmpgpfENl/file1a801a5307b15f/Banksy
─ installDir: /tmp/RtmpgpfENl/file1a801a10e2af6b
─ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3201/61150247ed849ae144c5938ca2c42b80e04c9309/Banksy.BiocCheck
─ platform: unix
─ isTarBall: TRUE
* Installing package...
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* NOTE: Update R version dependency from 3.5.0 to 4.3.0.
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for blank lines in DESCRIPTION...
* Checking if DESCRIPTION is well formatted...
* Checking for proper Description: field...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version field...
* Checking for valid maintainer...
* Checking License: for restrictive use...
* NOTE: License 'file LICENSE' unknown; licenses cannot restrict
use
* Checking for recommeded fields in DESCRIPTION...
* NOTE: Provide 'BugReports' field(s) in DESCRIPTION
* Checking for pinned package versions...
* Checking DESCRIPTION/NAMESPACE consistency...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
* WARNING: Evaluate more vignette chunks.
37 out of 54 code chunks = 68% unevaluated
0 non-exec code chunk(s) (e.g., '```r')
* NOTE: 'sessionInfo' not found in vignette(s)
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
* Checking for library/require of Banksy...
* Checking coding practice...
* WARNING: Remove set.seed usage (found 1 times)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* NOTE: The recommended function length is 50 lines or less. There
are 5 functions greater than 50 lines.
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source,
and vignette source...
* NOTE: Consider shorter lines; 31 lines (1%) are > 80 characters
long.
* NOTE: Consider multiples of 4 spaces for line indents; 192 lines
(6%) are not.
See https://contributions.bioconductor.org/r-code.html
See styler package: https://cran.r-project.org/package=styler as
described in the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
Maintainer is registered at support site.
Package name is in support site watched tags.
─ BiocCheck results ──
0 ERRORS | 2 WARNINGS | 7 NOTES
See the Banksy.BiocCheck folder and run
browseVignettes(package = 'BiocCheck')
for details.
nebbiolo2 BUILD BIN output
[top]