Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/rawDiag

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 22.04.2 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: rawDiag

Version: 0.99.1

RVersion: 4.4

BiocVersion: 3.19

BuildCommand: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rawDiag

BuildTime: 0 minutes 18.22 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: rawDiag_20231211162041

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: rawDiag. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘rawDiag/DESCRIPTION’ ... OK
* preparing ‘rawDiag’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘rawDiag.Rmd’ using rmarkdown

Quitting from lines 65-68 [readOrbitrap] (rawDiag.Rmd)
Error: processing vignette 'rawDiag.Rmd' failed with diagnostics:
'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
--- failed re-building ‘rawDiag.Rmd’

SUMMARY: processing the following file failed:
  ‘rawDiag.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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