Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/Banksy
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 22.04.2 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: Banksy
Version: 0.99.3
RVersion: 4.4
BiocVersion: 3.19
BuildCommand: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Banksy
BuildTime: 2 minutes 49.17 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: Banksy_20240103153541
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: Banksy. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘Banksy/DESCRIPTION’ ... OK
* preparing ‘Banksy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘batch-correction.Rmd’ using rmarkdown

Quitting from lines 114-136 [unnamed-chunk-8] (batch-correction.Rmd)
Error: processing vignette 'batch-correction.Rmd' failed with diagnostics:
'counts' is not a slot in class "Assay5"
--- failed re-building ‘batch-correction.Rmd’

--- re-building ‘domain-segment.Rmd’ using rmarkdown
--- finished re-building ‘domain-segment.Rmd’

--- re-building ‘multi-sample.Rmd’ using rmarkdown

Quitting from lines 94-116 [unnamed-chunk-7] (multi-sample.Rmd)
Error: processing vignette 'multi-sample.Rmd' failed with diagnostics:
no slot of name "data" for this object of class "Assay5"
--- failed re-building ‘multi-sample.Rmd’

--- re-building ‘parameter-selection.Rmd’ using rmarkdown
--- finished re-building ‘parameter-selection.Rmd’

SUMMARY: processing the following files failed:
  ‘batch-correction.Rmd’ ‘multi-sample.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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