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R CMD BUILD
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* checking for file ‘methodical/DESCRIPTION’ ... OK
* preparing ‘methodical’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘calculating_methylation_transcription_correlations.Rmd’ using rmarkdown
--- finished re-building ‘calculating_methylation_transcription_correlations.Rmd’
--- re-building ‘creating_a_methylation_rse_from_methylation_array_files.Rmd’ using rmarkdown
Quitting from lines 50-71 [unnamed-chunk-2] (creating_a_methylation_rse_from_methylation_array_files.Rmd)
Error: processing vignette 'creating_a_methylation_rse_from_methylation_array_files.Rmd' failed with diagnostics:
could not find function "GDCquery"
--- failed re-building ‘creating_a_methylation_rse_from_methylation_array_files.Rmd’
--- re-building ‘identifying_tmrs.Rmd’ using rmarkdown
--- finished re-building ‘identifying_tmrs.Rmd’
--- re-building ‘working_with_meth_rses.Rmd’ using rmarkdown
--- finished re-building ‘working_with_meth_rses.Rmd’
SUMMARY: processing the following file failed:
‘creating_a_methylation_rse_from_methylation_array_files.Rmd’
Error: Vignette re-building failed.
Execution halted