Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/squallms
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 22.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: squallms
Version: 0.99.0
RVersion: 4.4
BiocVersion: 3.19
BuildCommand: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data squallms
BuildTime: 1 minutes 0.30 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: squallms_20240404151935
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: squallms. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘squallms/DESCRIPTION’ ... OK
* preparing ‘squallms’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘intro_to_squallms.Rmd’ using rmarkdown

Quitting from lines 45-69 [run_xcms] (intro_to_squallms.Rmd)
Error: processing vignette 'intro_to_squallms.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'fillChromPeaks': error in evaluating the argument 'object' in selecting a method for function 'groupChromPeaks': error in evaluating the argument 'object' in selecting a method for function 'adjustRtime': error in evaluating the argument 'object' in selecting a method for function 'findChromPeaks': could not find function "readMSData"
--- failed re-building ‘intro_to_squallms.Rmd’

SUMMARY: processing the following file failed:
  ‘intro_to_squallms.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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