Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/CatsCradle

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
lconway	macOS 12.7.1 Monterey/x86_64	ERROR	skipped	skipped	skipped
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

lconway Summary

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Package: CatsCradle

Version: 0.99.6

RVersion: 4.4

BiocVersion: 3.20

BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle

BuildTime: 1 minutes 25.20 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: CatsCradle_20240723134421

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: CatsCradle. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

lconway BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown

  |                                                                            
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  |                                                                            
  |======================================================================| 100%
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
2024-07-23 09:46:01.812 R[35983:445437570] XType: com.apple.fonts is not accessible.
2024-07-23 09:46:01.812 R[35983:445437570] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘CatsCradle.Rmd’

--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CatsCradleExampleData", and the latter is "CatsCradle Example Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CatsCradleExampleData.Rmd’

--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

Quitting from lines 164-170 [unnamed-chunk-6] (CatsCradleQuickStart.Rmd)
Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleQuickStart.Rmd’

--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown

Quitting from lines 98-100 [unnamed-chunk-4] (CatsCradleSpatial.Rmd)
Error: processing vignette 'CatsCradleSpatial.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleSpatial.Rmd’

SUMMARY: processing the following files failed:
  ‘CatsCradleQuickStart.Rmd’ ‘CatsCradleSpatial.Rmd’

Error: Vignette re-building failed.
Execution halted

lconway CHECK output

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lconway BUILD BIN output

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nebbiolo2 Summary

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Package: CatsCradle

Version: 0.99.6

RVersion: 4.4

BiocVersion: 3.20

BuildCommand: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CatsCradle

BuildTime: 1 minutes 52.20 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: CatsCradle_20240723134421

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: CatsCradle. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘CatsCradle.Rmd’

--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CatsCradleExampleData", and the latter is "CatsCradle Example Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CatsCradleExampleData.Rmd’

--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown

  |                                                                            
  |                                                                      |   0%
  |                                                                            
  |======================================================================| 100%
Calculating gene variances
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0%   10   20   30   40   50   60   70   80   90   100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|

Quitting from lines 164-170 [unnamed-chunk-6] (CatsCradleQuickStart.Rmd)
Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleQuickStart.Rmd’

--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown

Quitting from lines 98-100 [unnamed-chunk-4] (CatsCradleSpatial.Rmd)
Error: processing vignette 'CatsCradleSpatial.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleSpatial.Rmd’

SUMMARY: processing the following files failed:
  ‘CatsCradleQuickStart.Rmd’ ‘CatsCradleSpatial.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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