===============================
R CMD BUILD
===============================
* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown
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Calculating gene variances
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
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2024-07-23 09:46:01.812 R[35983:445437570] XType: com.apple.fonts is not accessible.
2024-07-23 09:46:01.812 R[35983:445437570] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘CatsCradle.Rmd’
--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown
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Calculating gene variances
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
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Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CatsCradleExampleData", and the latter is "CatsCradle Example Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CatsCradleExampleData.Rmd’
--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown
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Calculating gene variances
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Quitting from lines 164-170 [unnamed-chunk-6] (CatsCradleQuickStart.Rmd)
Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleQuickStart.Rmd’
--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown
Quitting from lines 98-100 [unnamed-chunk-4] (CatsCradleSpatial.Rmd)
Error: processing vignette 'CatsCradleSpatial.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleSpatial.Rmd’
SUMMARY: processing the following files failed:
‘CatsCradleQuickStart.Rmd’ ‘CatsCradleSpatial.Rmd’
Error: Vignette re-building failed.
Execution halted
===============================
R CMD BUILD
===============================
* checking for file ‘CatsCradle/DESCRIPTION’ ... OK
* preparing ‘CatsCradle’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CatsCradle.Rmd’ using rmarkdown
|
| | 0%
|
|======================================================================| 100%
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
--- finished re-building ‘CatsCradle.Rmd’
--- re-building ‘CatsCradleExampleData.Rmd’ using rmarkdown
|
| | 0%
|
|======================================================================| 100%
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "CatsCradleExampleData", and the latter is "CatsCradle Example Data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘CatsCradleExampleData.Rmd’
--- re-building ‘CatsCradleQuickStart.Rmd’ using rmarkdown
|
| | 0%
|
|======================================================================| 100%
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Using method 'umap'
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
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[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Quitting from lines 164-170 [unnamed-chunk-6] (CatsCradleQuickStart.Rmd)
Error: processing vignette 'CatsCradleQuickStart.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleQuickStart.Rmd’
--- re-building ‘CatsCradleSpatial.Rmd’ using rmarkdown
Quitting from lines 98-100 [unnamed-chunk-4] (CatsCradleSpatial.Rmd)
Error: processing vignette 'CatsCradleSpatial.Rmd' failed with diagnostics:
argument "FUN" is missing, with no default
--- failed re-building ‘CatsCradleSpatial.Rmd’
SUMMARY: processing the following files failed:
‘CatsCradleQuickStart.Rmd’ ‘CatsCradleSpatial.Rmd’
Error: Vignette re-building failed.
Execution halted