Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/chevreul
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
lconway macOS 12.7.1 Monterey/x86_64   ERROR     skipped     skipped     skipped  

lconway Summary

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Package: chevreul
Version: 0.99.6
RVersion: 4.4
BiocVersion: 3.20
BuildCommand: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data chevreul
BuildTime: 4 minutes 7.02 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: chevreul_20240809171023
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: chevreul. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

lconway BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘chevreul/DESCRIPTION’ ... OK
* preparing ‘chevreul’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘chevreul.Rmd’ using rmarkdown
--- finished re-building ‘chevreul.Rmd’

--- re-building ‘integration.Rmd’ using rmarkdown

Quitting from lines 63-69 [unnamed-chunk-2] (integration.Rmd)
Error: processing vignette 'integration.Rmd' failed with diagnostics:
could not find function "integration_workflow"
--- failed re-building ‘integration.Rmd’

--- re-building ‘preprocessing.Rmd’ using rmarkdown

Quitting from lines 95-97 [unnamed-chunk-4] (preprocessing.Rmd)
Error: processing vignette 'preprocessing.Rmd' failed with diagnostics:
could not find function "object_preprocess"
--- failed re-building ‘preprocessing.Rmd’

--- re-building ‘shiny_app.Rmd’ using rmarkdown
--- finished re-building ‘shiny_app.Rmd’

--- re-building ‘visualization.Rmd’ using rmarkdown
2024-08-09 13:13:53.495 R[91314:588494940] XType: com.apple.fonts is not accessible.
2024-08-09 13:13:53.496 R[91314:588494940] XType: XTFontStaticRegistry is enabled.
--- finished re-building ‘visualization.Rmd’

SUMMARY: processing the following files failed:
  ‘integration.Rmd’ ‘preprocessing.Rmd’

Error: Vignette re-building failed.
Execution halted

lconway CHECK output

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lconway BUILD BIN output
 
                    			
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