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R CMD BUILD
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* checking for file ‘immApex/DESCRIPTION’ ... OK
* preparing ‘immApex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immApex.Rmd’ using rmarkdown
trying URL 'https://github.com/pyenv/pyenv-installer/raw/master/bin/pyenv-installer'
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downloaded 2827 bytes
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv'...
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv/plugins/pyenv-doctor'...
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv/plugins/pyenv-update'...
Cloning into '/media/volume/teran2_disk/pkgbuild/.local/share/r-reticulate/pyenv/plugins/pyenv-virtualenv'...
WARNING: seems you still have not added 'pyenv' to the load path.
# Load pyenv automatically by appending
# the following to
# ~/.bash_profile if it exists, otherwise ~/.profile (for login shells)
# and ~/.bashrc (for interactive shells) :
export PYENV_ROOT="$HOME/.pyenv"
[[ -d $PYENV_ROOT/bin ]] && export PATH="$PYENV_ROOT/bin:$PATH"
eval "$(pyenv init -)"
# Restart your shell for the changes to take effect.
# Load pyenv-virtualenv automatically by adding
# the following to ~/.bashrc:
eval "$(pyenv virtualenv-init -)"
Cloning into '/home/pkgbuild/.pyenv/plugins/pyenv-update'...
Downloading Python-3.10.15.tar.xz...
-> https://www.python.org/ftp/python/3.10.15/Python-3.10.15.tar.xz
Installing Python-3.10.15...
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Installing collected packages: wheel, setuptools, pip
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Attempting uninstall: pip
Found existing installation: pip 23.0.1
Uninstalling pip-23.0.1:
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Building wheels for collected packages: promise
Building wheel for promise (setup.py): started
Building wheel for promise (setup.py): finished with status 'done'
Created wheel for promise: filename=promise-2.3-py3-none-any.whl size=21482 sha256=2ff8668cefb77ac878a9f3805e84e255b094960e706ba32987f4d56d50f080bf
Stored in directory: /media/volume/teran2_disk/pkgbuild/.cache/pip/wheels/54/4e/28/3ed0e1c8a752867445bab994d2340724928aa3ab059c57c8db
Successfully built promise
Installing collected packages: pytz, libclang, flatbuffers, dm-tree, zipp, wrapt, urllib3, tzdata, typing-extensions, tqdm, toml, termcolor, tensorflow-io-gcs-filesystem, tensorflow-estimator, tensorboard-data-server, six, pyparsing, pyasn1, psutil, protobuf, Pillow, packaging, opt-einsum, oauthlib, numpy, MarkupSafe, markdown, keras, importlib_resources, immutabledict, idna, grpcio, gast, fsspec, etils, docstring-parser, click, charset-normalizer, certifi, cachetools, absl-py, werkzeug, tensorflow-metadata, simple-parsing, scipy, rsa, requests, python-dateutil, pydot, pyasn1-modules, pyarrow, promise, ml-dtypes, h5py, google-pasta, astunparse, requests-oauthlib, pandas, google-auth, google-auth-oauthlib, array-record, tensorboard, tensorflow-datasets, tensorflow, tf-keras, tensorflow-hub
Successfully installed MarkupSafe-3.0.1 Pillow-11.0.0 absl-py-2.1.0 array-record-0.5.1 astunparse-1.6.3 cachetools-5.5.0 certifi-2024.8.30 charset-normalizer-3.4.0 click-8.1.7 dm-tree-0.1.8 docstring-parser-0.16 etils-1.10.0 flatbuffers-24.3.25 fsspec-2024.9.0 gast-0.6.0 google-auth-2.35.0 google-auth-oauthlib-1.2.1 google-pasta-0.2.0 grpcio-1.67.0 h5py-3.12.1 idna-3.10 immutabledict-4.2.0 importlib_resources-6.4.5 keras-2.15.0 libclang-18.1.1 markdown-3.7 ml-dtypes-0.3.2 numpy-1.26.4 oauthlib-3.2.2 opt-einsum-3.4.0 packaging-24.1 pandas-2.2.3 promise-2.3 protobuf-3.20.3 psutil-6.0.0 pyarrow-17.0.0 pyasn1-0.6.1 pyasn1-modules-0.4.1 pydot-3.0.2 pyparsing-3.2.0 python-dateutil-2.9.0.post0 pytz-2024.2 requests-2.32.3 requests-oauthlib-2.0.0 rsa-4.9 scipy-1.14.1 simple-parsing-0.1.6 six-1.16.0 tensorboard-2.15.2 tensorboard-data-server-0.7.2 tensorflow-2.15.1 tensorflow-datasets-4.9.6 tensorflow-estimator-2.15.0 tensorflow-hub-0.16.1 tensorflow-io-gcs-filesystem-0.37.1 tensorflow-metadata-1.16.1 termcolor-2.5.0 tf-keras-2.15.1 toml-0.10.2 tqdm-4.66.5 typing-extensions-4.12.2 tzdata-2024.2 urllib3-2.2.3 werkzeug-3.0.4 wrapt-1.14.1 zipp-3.20.2
Quitting from lines 107-115 [unnamed-chunk-5] (immApex.Rmd)
Error: processing vignette 'immApex.Rmd' failed with diagnostics:
Valid installation of TensorFlow not found.
Python environments searched for 'tensorflow' package:
/usr/bin/python3.12
Python exception encountered:
Traceback (most recent call last):
File "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 122, in _find_and_load_hook
return _run_hook(name, _hook)
^^^^^^^^^^^^^^^^^^^^^^
File "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 96, in _run_hook
module = hook()
^^^^^^
File "/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library/reticulate/python/rpytools/loader.py", line 120, in _hook
return _find_and_load(name, import_)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ModuleNotFoundError: No module named 'tensorflow'
You can install TensorFlow using the install_tensorflow() function.
--- failed re-building ‘immApex.Rmd’
SUMMARY: processing the following file failed:
‘immApex.Rmd’
Error: Vignette re-building failed.
Execution halted