Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/MetaboDynamics

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
teran2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

teran2 Summary

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Package: MetaboDynamics

Version: 0.99.5

RVersion: 4.4

BiocVersion: 3.20

BuildCommand: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MetaboDynamics

BuildTime: 3 minutes 34.03 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: MetaboDynamics_20241025214141

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: MetaboDynamics. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

teran2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘MetaboDynamics/DESCRIPTION’ ... OK
* preparing ‘MetaboDynamics’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MetaboDynamics.Rmd’ using rmarkdown

Quitting from lines 252-270 [unnamed-chunk-11] (MetaboDynamics.Rmd)
Error: processing vignette 'MetaboDynamics.Rmd' failed with diagnostics:
object of type 'closure' is not subsettable
--- failed re-building ‘MetaboDynamics.Rmd’

SUMMARY: processing the following file failed:
  ‘MetaboDynamics.Rmd’

Error: Vignette re-building failed.
Execution halted

teran2 CHECK output

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teran2 BUILD BIN output

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