Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/DeconvoBuddies

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: DeconvoBuddies

Version: 0.99.22

RVersion: 4.5

BiocVersion: 3.21

BuildCommand: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data DeconvoBuddies

BuildTime: 5 minutes 46.06 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: DeconvoBuddies_20250217141231

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: DeconvoBuddies. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘DeconvoBuddies/DESCRIPTION’ ... OK
* preparing ‘DeconvoBuddies’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DeconvoBuddies.Rmd’ using rmarkdown

Quitting from lines 407-441 (DeconvoBuddies.Rmd)
Error: processing vignette 'DeconvoBuddies.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘DeconvoBuddies.Rmd’

--- re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’ using rmarkdown
--- finished re-building ‘Deconvolution_Benchmark_DLPFC.Rmd’

--- re-building ‘Marker_Finding.Rmd’ using rmarkdown
--- finished re-building ‘Marker_Finding.Rmd’

SUMMARY: processing the following file failed:
  ‘DeconvoBuddies.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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