Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/Coralysis

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

[top]

Package: Coralysis

Version: 0.99.0

RVersion: 4.5

BiocVersion: 3.21

BuildCommand: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Coralysis

BuildTime: 7 minutes 1.60 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: Coralysis_20250224133130

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: Coralysis. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘Coralysis/DESCRIPTION’ ... OK
* preparing ‘Coralysis’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CellState.Rmd’ using rmarkdown

Quitting from lines 47-50 [unnamed-chunk-1] (CellState.Rmd)
Error: processing vignette 'CellState.Rmd' failed with diagnostics:
cannot read from connection
--- failed re-building ‘CellState.Rmd’

--- re-building ‘Coralysis.Rmd’ using rmarkdown
--- finished re-building ‘Coralysis.Rmd’

--- re-building ‘Integration.Rmd’ using rmarkdown
--- finished re-building ‘Integration.Rmd’

--- re-building ‘RefMap.Rmd’ using rmarkdown
--- finished re-building ‘RefMap.Rmd’

SUMMARY: processing the following file failed:
  ‘CellState.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

[top]

nebbiolo1 BUILD BIN output

[top]