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URL: https://git.bioconductor.org/packages/RbowtieCuda

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo1 Summary

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Package: RbowtieCuda

Version: 0.99.0

RVersion: 4.5

BiocVersion: 3.21

BuildCommand: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RbowtieCuda

BuildTime: 0 minutes 1.06 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: RbowtieCuda_20250317180646

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: RbowtieCuda. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 1. Build Package status: 1.

nebbiolo1 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘RbowtieCuda/DESCRIPTION’ ... OK
* preparing ‘RbowtieCuda’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘RbowtieCuda’ ...
** this is package ‘RbowtieCuda’ version ‘0.99.0’
** using staged installation
** libs
cd "../src/nvbio/build" && rm -f CMakeCache.txt && cmake ..
-- The C compiler identification is GNU 13.3.0
-- The CXX compiler identification is GNU 13.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Error at /usr/share/cmake-3.28/Modules/FindCUDAToolkit.cmake:855 (message):
  Could not find nvcc, please set CUDAToolkit_ROOT.
Call Stack (most recent call first):
  CMakeLists.txt:11 (find_package)


-- Configuring incomplete, errors occurred!
make: *** [Makefile:10: all] Error 1
ERROR: compilation failed for package ‘RbowtieCuda’
* removing ‘/tmp/Rtmpc0n2Vi/Rinst552f0d4df837/RbowtieCuda’
      -----------------------------------
ERROR: package installation failed

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output

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