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URL:  https://git.bioconductor.org/packages/PloidyPeaks
Last Changed Rev:  / Revision: 
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Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo1 Linux (Ubuntu 24.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo1 Summary

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Package: PloidyPeaks
Version: 0.99.5
RVersion: 4.5
BiocVersion: 3.21
BuildCommand: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PloidyPeaks
BuildTime: 0 minutes 35.38 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: PloidyPeaks_20250328223704
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: PloidyPeaks. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo1 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘PloidyPeaks/DESCRIPTION’ ... OK
* preparing ‘PloidyPeaks’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ploidyPeaks.Rmd’ using rmarkdown
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /tmp/RtmpYJFsJG/bioc_cache_29209f6fa90922/raw_data (probably via setwd()). It will be restored to /tmp/Rtmp0iUejR/Rbuild291a6b5f66ccf1/PloidyPeaks/vignettes. See the Note section in ?knitr::knit
Warning in in_dir(input_dir(), expr) :
  You changed the working directory to /tmp/RtmpYJFsJG/bioc_cache_29209f6fa90922/raw_data (probably via setwd()). It will be restored to /tmp/Rtmp0iUejR/Rbuild291a6b5f66ccf1/PloidyPeaks/vignettes. See the Note section in ?knitr::knit

Quitting from ploidyPeaks.Rmd:449-457 [unnamed-chunk-28]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ploidyPeaks.Rmd' failed with diagnostics:
i In argument: `g3LL = x + possiblePairX - g1G2Range`.
Caused by error:
! `g3LL` must be size 1, not 0.
--- failed re-building ‘ploidyPeaks.Rmd’

SUMMARY: processing the following file failed:
  ‘ploidyPeaks.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo1 CHECK output

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nebbiolo1 BUILD BIN output
 
                    			
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