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URL: https://git.bioconductor.org/packages/msigdbeh

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: msigdbeh

Version: 0.99.2

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data msigdbeh

BuildTime: 1 minutes 9.28 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: msigdbeh_20250506182828

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: msigdbeh. Starting Build package.

PostProcessing: Finished Git clone. Package type: ExperimentData. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘msigdbeh/DESCRIPTION’ ... OK
* preparing ‘msigdbeh’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘msigdbeh.Rmd’ using rmarkdown

Quitting from msigdbeh.Rmd:43-45 [msigdbeh]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! failed to load resource
  name: EH9632
  title: MSigDB v2024.1.Hs
  reason: 1 resources failed to download
---
Backtrace:
     ▆
  1. └─msigdbeh::msigdbeh(species = "HS")
  2.   ├─hubq[[rownames(hubdf)[1]]]
  3.   └─hubq[[rownames(hubdf)[1]]]
  4.     └─ExperimentHub (local) .local(x, i, j = j, ...)
  5.       ├─methods::callNextMethod(x, i, j, ..., force = force, verbose = verbose)
  6.       │ └─base::eval(call, callEnv)
  7.       │   └─base::eval(call, callEnv)
  8.       └─AnnotationHub (local) .nextMethod(x, i, j, ..., force = force, verbose = verbose)
  9.         └─AnnotationHub (local) .local(x, i, j = j, ...)
 10.           └─AnnotationHub:::.Hub_get1(x[idx], force = force, verbose = verbose)
 11.             └─base::tryCatch(...)
 12.               └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.                 └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.                   └─value[[3L]](cond)
 15.                     └─base::tryCatch(...)
 16.                       └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 17.                         └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 18.                           └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'msigdbeh.Rmd' failed with diagnostics:
failed to load resource
  name: EH9632
  title: MSigDB v2024.1.Hs
  reason: 1 resources failed to download
--- failed re-building ‘msigdbeh.Rmd’

SUMMARY: processing the following file failed:
  ‘msigdbeh.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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