Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/fatTissueTumor
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

[top]

Package: fatTissueTumor
Version: 0.99.0
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fatTissueTumor
BuildTime: 0 minutes 25.38 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: fatTissueTumor_20250519173236
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: fatTissueTumor. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘fatTissueTumor/DESCRIPTION’ ... OK
* preparing ‘fatTissueTumor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fatTissueTumor-worflow.Rmd’ using rmarkdown
--- finished re-building ‘fatTissueTumor-worflow.Rmd’

--- re-building ‘pipeline-preprocessing.Rmd’ using rmarkdown

Quitting from pipeline-preprocessing.Rmd:123-127 [enrich_automatic]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `enrichment_auto_hgu95()`:
! Package HG-U95 is required for this function. Please install it.
---
Backtrace:
    ▆
 1. └─fatTissueTumor::enrichment_auto_hgu95(gene_list, type = "GO")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'pipeline-preprocessing.Rmd' failed with diagnostics:
Package HG-U95 is required for this function. Please install it.
--- failed re-building ‘pipeline-preprocessing.Rmd’

SUMMARY: processing the following file failed:
  ‘pipeline-preprocessing.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

[top]


                				
 

                            
 
                                
                				
nebbiolo2 BUILD BIN output
 
                    			
[top]