Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/linkSet
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: linkSet
Version: 0.99.11
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data linkSet
BuildTime: 0 minutes 29.04 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: linkSet_20250620055717
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: linkSet. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 1. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘linkSet/DESCRIPTION’ ... OK
* preparing ‘linkSet’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘linkSet’ ...
** this is package ‘linkSet’ version ‘0.99.11’
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for ‘Convert’ with signature ‘x="GInteractions"’: no definition for class “GInteractions”
in method for ‘baitGInteractions’ with signature ‘x="GInteractions",geneGr="GRanges",peakGr="GRanges"’: no definition for class “GInteractions”
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘linkSet’ in namespaceExport(ns, exports):
 undefined exports: try-catch, Model, Split, based, criteria, fragments, on, wrapper
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/tmp/RtmpxFZ8KG/Rinst2c679f75e0d5f3/linkSet’
      -----------------------------------
ERROR: package installation failed

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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