Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/StatescopeR
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

[top]

Package: StatescopeR
Version: 0.99.0
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data StatescopeR
BuildTime: 1 minutes 13.27 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: StatescopeR_20250620162627
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: StatescopeR. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘StatescopeR/DESCRIPTION’ ... OK
* preparing ‘StatescopeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘StatescopeR.Rmd’ using rmarkdown

Quitting from StatescopeR.Rmd:118-136 [Prepare StatescopeR input]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `lock()`:
! Directory of lock file does not exist: '/var/cache/basilisk'
---
Backtrace:
    ▆
 1. └─StatescopeR::select_genes(scRNAseq, 200L)
 2.   └─basilisk::basiliskStart(autogenes, testload = c("autogenes"))
 3.     └─basilisk::obtainEnvironmentPath(env)
 4.       └─basilisk::lockExternalDir(exdir, exclusive = FALSE)
 5.         └─dir.expiry::lockDirectory(path, ...)
 6.           └─filelock::lock(plock, exclusive = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'StatescopeR.Rmd' failed with diagnostics:
Directory of lock file does not exist: '/var/cache/basilisk'
--- failed re-building ‘StatescopeR.Rmd’

SUMMARY: processing the following file failed:
  ‘StatescopeR.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

[top]


                				
 

                            
 
                                
                				
nebbiolo2 BUILD BIN output
 
                    			
[top]