Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/FlexAssays

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

[top]

Package: FlexAssays

Version: 0.99.0

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FlexAssays

BuildTime: 0 minutes 25.07 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: FlexAssays_20250630182934

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: FlexAssays. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘FlexAssays/DESCRIPTION’ ... OK
* preparing ‘FlexAssays’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FlexAssays-intro.Rmd’ using rmarkdown

Quitting from FlexAssays-intro.Rmd:293-298 [unnamed-chunk-24]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `as_integer_dim()`:
! 'dim' must be an integer vector
---
Backtrace:
    ▆
 1. ├─methods (local) `[[<-`(`*tmp*`, "m3", value = `<dgCMatrx[,8]>`)
 2. └─FlexAssays (local) `[[<-`(`*tmp*`, "m3", value = `<dgCMatrx[,8]>`)
 3.   └─FlexAssays::setOneAssay(x, i, value)
 4.     └─FlexAssays::`mappedRowNames<-`(...)
 5.       └─FlexAssays:::.add_logmap_labels(...)
 6.         └─SparseArray::SVT_SparseArray(...)
 7.           └─S4Arrays:::normarg_dim(dim)
 8.             └─S4Arrays:::as_integer_dim(dim, paste0("'", argname, "'"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'FlexAssays-intro.Rmd' failed with diagnostics:
'dim' must be an integer vector
--- failed re-building ‘FlexAssays-intro.Rmd’

--- re-building ‘MultiAssayExperiment-comparison.Rmd’ using rmarkdown
--- finished re-building ‘MultiAssayExperiment-comparison.Rmd’

SUMMARY: processing the following file failed:
  ‘FlexAssays-intro.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

[top]

nebbiolo2 BUILD BIN output

[top]