===============================
R CMD BUILD
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* checking for file ‘singIST/DESCRIPTION’ ... OK
* preparing ‘singIST’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘singISTvignette.Rmd’ using rmarkdown
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’
Quitting from singISTvignette.Rmd:252-265 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
---
Backtrace:
▆
1. └─singIST::singISTrecapitulations(oxa_org, superpathways_fit[[1]])
2. └─singIST::biological_link_function(object, model_object, ...)
3. └─singIST::orthology_mapping(...)
4. └─biomaRt::useMart(...)
5. └─biomaRt:::.useMart(...)
6. └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'singISTvignette.Rmd' failed with diagnostics:
Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
--- failed re-building ‘singISTvignette.Rmd’
SUMMARY: processing the following file failed:
‘singISTvignette.Rmd’
Error: Vignette re-building failed.
Execution halted