Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/singIST
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: singIST
Version: 0.99.1
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data singIST
BuildTime: 9 minutes 49.05 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: singIST_20250630184146
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: singIST. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 1. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘singIST/DESCRIPTION’ ... OK
* preparing ‘singIST’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘singISTvignette.Rmd’ using rmarkdown
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’ 
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’ 
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’ 
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’ 
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’ 
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’ 
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’ 
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’ 
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’ 
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’ 
Warning messages:
1: replacing previous import ‘data.table::transpose’ by ‘purrr::transpose’ when loading ‘singIST’ 
2: replacing previous import ‘SingleCellExperiment::weights’ by ‘stats::weights’ when loading ‘singIST’ 

Quitting from singISTvignette.Rmd:252-265 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
---
Backtrace:
    ▆
 1. └─singIST::singISTrecapitulations(oxa_org, superpathways_fit[[1]])
 2.   └─singIST::biological_link_function(object, model_object, ...)
 3.     └─singIST::orthology_mapping(...)
 4.       └─biomaRt::useMart(...)
 5.         └─biomaRt:::.useMart(...)
 6.           └─biomaRt:::.listMarts(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'singISTvignette.Rmd' failed with diagnostics:
Your query has been redirected to http://status.ensembl.org indicating this Ensembl service is currently unavailable.
Look at ?useEnsembl for details on how to try a mirror site.
--- failed re-building ‘singISTvignette.Rmd’

SUMMARY: processing the following file failed:
  ‘singISTvignette.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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