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URL:  https://git.bioconductor.org/packages/CENTREprecomputed
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.1 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: CENTREprecomputed
Version: 0.99.0
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CENTREprecomputed
BuildTime: 0 minutes 11.38 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: CENTREprecomputed_20250701165206
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: CENTREprecomputed. Starting Build package.
PostProcessing: Finished Git clone. Package type: ExperimentData. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘CENTREprecomputed/DESCRIPTION’ ... OK
* preparing ‘CENTREprecomputed’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CENTREprecomputed.Rmd’ using rmarkdown

Quitting from CENTREprecomputed.Rmd:64-76 [how to fetch fata]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.build_query()`:
! Columns pair, cor_CRUP are not present in the database. Use 'tables' to list all tables and their columns.
---
Backtrace:
    ▆
 1. └─CENTREprecomputed::fetch_data(...)
 2.   └─CENTREprecomputed:::.build_query(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'CENTREprecomputed.Rmd' failed with diagnostics:
Columns pair, cor_CRUP are not present in the database. Use 'tables' to list all tables and their columns.
--- failed re-building ‘CENTREprecomputed.Rmd’

SUMMARY: processing the following file failed:
  ‘CENTREprecomputed.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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