Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/stPipe

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: stPipe

Version: 0.99.96

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data stPipe

BuildTime: 0 minutes 3.74 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: stPipe_20250704073859

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: stPipe. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 1. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘stPipe/DESCRIPTION’ ... OK
* preparing ‘stPipe’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘stPipe’ ...
** this is package ‘stPipe’ version ‘0.99.96’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rhdf5lib/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rhtslib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.22-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rhdf5lib/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/testthat/include' -I'/home/biocbuild/bbs-3.22-bioc/R/site-library/Rhtslib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c st_demul.cpp -o st_demul.o
st_demul.cpp:27:10: fatal error: progressbar.h: No such file or directory
   27 | #include "progressbar.h"
      |          ^~~~~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.22-bioc/R/etc/Makeconf:209: st_demul.o] Error 1
ERROR: compilation failed for package ‘stPipe’
* removing ‘/tmp/Rtmp1cWHTu/Rinst23989dea0afe/stPipe’
      -----------------------------------
ERROR: package installation failed

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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