Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/Ibex

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: Ibex

Version: 0.99.23

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Ibex

BuildTime: 1 minutes 0.72 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: Ibex_20250731195309

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: Ibex. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘Ibex/DESCRIPTION’ ... OK
* preparing ‘Ibex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Ibex.Rmd’ using knitr

Quitting from Ibex.Rmd:279-301 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BCR[, "cdr3_aa"]`:
! incorrect number of dimensions
---
Backtrace:
    ▆
 1. └─Ibex::Ibex.matrix(...)
 2.   └─Ibex:::checkLength(x = BCR[, "cdr3_aa"], expanded = expanded.sequences)
 3.     └─stats::na.omit(nchar(x))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'Ibex.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘Ibex.Rmd’

SUMMARY: processing the following file failed:
  ‘Ibex.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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