Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/HiCaptuRe
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.2 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: HiCaptuRe
Version: 0.99.11
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiCaptuRe
BuildTime: 0 minutes 51.37 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: HiCaptuRe_20250811113614
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: HiCaptuRe. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

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* checking for file ‘HiCaptuRe/DESCRIPTION’ ... OK
* preparing ‘HiCaptuRe’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignetteIntroduction.Rmd’ using rmarkdown
--- finished re-building ‘vignetteIntroduction.Rmd’

--- re-building ‘vignette_functions.Rmd’ using rmarkdown
Error: processing vignette 'vignette_functions.Rmd' failed with diagnostics:
Invalid chunk options: library, comment=F, message=F,library

All options must be of the form 'tag=value' except for the chunk label.
Error: tangling vignette 'vignette_functions.Rmd' failed with diagnostics:
Invalid chunk options: library, comment=F, message=F,library

All options must be of the form 'tag=value' except for the chunk label.
--- failed re-building ‘vignette_functions.Rmd’

SUMMARY: processing the following files failed:
  ‘vignette_functions.Rmd’ ‘vignette_functions.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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