Bioconductor Single Package Builder - Build History

Snapshot Date: 
URL:  https://git.bioconductor.org/packages/scToppR
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: scToppR
Version: 0.99.3
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data scToppR
BuildTime: 1 minutes 9.48 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: scToppR_20250903161800
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: scToppR. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘scToppR/DESCRIPTION’ ... OK
* preparing ‘scToppR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘differential_expression_airway.Rmd’ using rmarkdown

Quitting from differential_expression_airway.Rmd:23-49 [setup]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'differential_expression_airway.Rmd' failed with diagnostics:
Could not find a root 'DESCRIPTION' file that starts with '^Package' in
'/Users/bryanwgranger/biocm/packages/scToppR'.
i Are you in your project directory and does your project have a 'DESCRIPTION'
  file?
--- failed re-building ‘differential_expression_airway.Rmd’

--- re-building ‘differential_expression_seurat.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "differential_expression_seurat", and the latter is "scToppR with differential expression, Seurat object data". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘differential_expression_seurat.Rmd’

--- re-building ‘introduction.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "introduction", and the latter is "Introduction to scToppR". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘differential_expression_airway.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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