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URL: https://git.bioconductor.org/packages/PloidyPeaks

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

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Package: PloidyPeaks

Version: 0.99.12

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PloidyPeaks

BuildTime: 0 minutes 27.22 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: PloidyPeaks_20250915071900

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: PloidyPeaks. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘PloidyPeaks/DESCRIPTION’ ... OK
* preparing ‘PloidyPeaks’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ploidyPeaks.Rmd’ using rmarkdown

Quitting from ploidyPeaks.Rmd:396-408 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. └─PloidyPeaks::rectGateFlowFrame(...)
  2.   ├─ggcyto::autoplot(flowData, xVariable, yVariable, bins = 64)
  3.   └─ggcyto:::autoplot.flowFrame(flowData, xVariable, yVariable, bins = 64)
  4.     ├─ggplot2::autoplot(object, x = x, ...)
  5.     └─ggcyto:::autoplot.flowSet(object, x = x, ...)
  6.       ├─ggcyto::ggcyto(...)
  7.       └─ggcyto:::ggcyto.flowSet(...)
  8.         ├─p + ggcyto_par_default()
  9.         └─p + ggcyto_par_default()
 10.           └─ggcyto:::add_ggcyto(e1, e2, e2name)
 11.             ├─e1 + e2.new
 12.             └─e1 + e2.new
 13.               └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ploidyPeaks.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘ploidyPeaks.Rmd’

SUMMARY: processing the following file failed:
  ‘ploidyPeaks.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output

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