Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/asuri

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)/x86_64	OK	OK	skipped	OK

nebbiolo2 Summary

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Package: asuri

Version: 0.99.16

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data asuri

BuildTime: 4 minutes 42.18 seconds

CheckCommand: BiocCheckGitClone('asuri') && /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/3793/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri.install-out.txt asuri_0.99.16.tar.gz && BiocCheck('asuri_0.99.16.tar.gz', `new-package`=TRUE)

CheckTime: 7 minutes 38.37 seconds

BuildBinCommand:

BuildBinTime:

PackageFileSize: 11731.11 KiB

BuildID:: asuri_20250918084136

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: asuri. Starting Build package. Starting Check package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 0.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘asuri/DESCRIPTION’ ... OK
* preparing ‘asuri’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: asuri
* saving partial Rd database
* creating vignettes ... OK
* excluding invalid files
Subdirectory 'R' contains invalid file names:
  ‘_package.R’
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘asuri_0.99.16.tar.gz’

nebbiolo2 CHECK output

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===============================

 BiocCheckGitClone('asuri')

===============================

→ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri
→ BiocVersion: 3.22
→ Package: asuri
→ PackageVersion: 0.99.16
→ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri.BiocCheck
→ BiocCheckVersion: 1.45.18
→ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri
→ installDir: NULL
→ isTarBall: FALSE
→ platform: unix
* Checking valid files...
* Checking individual file sizes...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking if DESCRIPTION is well formatted...
* Checking NAMESPACE...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
── BiocCheck v1.45.18 results ──────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | i 0 NOTES
i For more details, run
  browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

===============================

* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘asuri/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘asuri’ version ‘0.99.16’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘asuri’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [9s/9s] OK
* checking whether the package can be loaded with stated dependencies ... [8s/8s] OK
* checking whether the package can be unloaded cleanly ... [8s/8s] OK
* checking whether the namespace can be loaded with stated dependencies ... [8s/8s] OK
* checking whether the namespace can be unloaded cleanly ... [8s/8s] OK
* checking loading without being on the library search path ... [9s/9s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘Rdpack’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [30s/30s] OK
* checking Rd files ... [9s/9s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Unknown packages ‘genePheno’, ‘patientRisk’, ‘predict_PatientRisk’, ‘prefilterSAM’ in Rd xrefs
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [8s/8s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [234s/234s] OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
plotKM        36.701  0.087  36.789
genePheno     25.079  0.240  25.319
geneSurv      20.912  0.081  20.994
plotProbClass 20.775  0.004  20.779
plotBoxplot   20.614  0.059  20.674
plotBetas     16.181  0.019  16.201
plotLogRank   15.503  0.001  15.504
patientRisk   15.369  0.091  15.460
plotSigmoid   15.317  0.003  15.320
plotLambda    14.997  0.005  15.004
prefilterSAM  13.847  0.248  14.095
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [4s/4s] OK
* DONE

Status: 2 NOTEs
See
  ‘/home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri.Rcheck/00check.log’
for details.





===============================

 BiocCheck('asuri_0.99.16.tar.gz')

===============================

── Installing asuri ────────────────────────────────────────────────────────────
✔ Package installed successfully
── asuri session metadata ──────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpIGsBfL/file20a98e2e333399/asuri
→ BiocVersion: 3.22
→ Package: asuri
→ PackageVersion: 0.99.16
→ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3793/4c9f55e8604718306f171e551581e070d166f721/asuri.BiocCheck
→ BiocCheckVersion: 1.45.18
→ sourceDir: /tmp/RtmpIGsBfL/file20a98e2e333399/asuri
→ installDir: /tmp/RtmpIGsBfL/file20a98e7540cbe0
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on asuri ──────────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
i Bioconductor dependencies found in Imports & Depends (19%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
i NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
i NOTE: Vignette(s) found with missing chunk labels
Found in files:
• asuri.Rmd
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:103: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:104: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:135: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:136: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:167: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:168: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:84: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:85: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:101: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:102: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:73: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:74: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:75: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:46: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:47: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:48: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:49: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:50: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:51: unknown macro '\insertRef'
* Checking for library/require of asuri...
* Checking coding practice...
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
i NOTE: The recommended function length is 50 lines or less. There are 11
functions greater than 50 lines.
The longest 5 functions are:
• patientRisk() (R/patientRisk.R): 550 lines
• ...
• predict_PatientRisk() (R/predictPatientRisk.R): 104 lines
* Checking man page documentation...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:103: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:104: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:135: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:136: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:167: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:168: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:84: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:85: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:101: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:102: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:73: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:74: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:75: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:46: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:47: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:48: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:49: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:50: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:51: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:103: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:104: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:135: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:136: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:167: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:168: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:84: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:85: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:101: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:102: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:73: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:74: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:75: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:46: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:47: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:48: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:49: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:50: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:51: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:103: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/genePheno.Rd:104: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:135: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/geneSurv.Rd:136: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:167: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/patientRisk.Rd:168: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:84: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_PatientRisk.Rd:85: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:101: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/predict_SurvCurve.Rd:102: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:73: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:74: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/prefilterSAM.Rd:75: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:46: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:47: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:48: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:49: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:50: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpIGsBfL/file20a98e2e333399/asuri/man/seBRCA.Rd:51: unknown macro '\insertRef'
* Checking package NEWS...
* Checking unit tests...
i NOTE: Consider adding unit tests. We strongly encourage them. See
https://contributions.bioconductor.org/tests.html
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
i NOTE: Consider shorter lines; 157 lines (4%) are > 80 characters long.
First few lines:
• R/genePheno.R#L73 #' ex_genePheno <- genePheno(seBRCA, ex_ ...
• ...
• vignettes/asuri.Rmd#L510 Finally, two Bioconductor packages that ...
i NOTE: Consider multiples of 4 spaces for line indents; 729 lines (17%) are
not.
First few lines:
• R/genePheno.R#L98 stop("SEdata must be a 'Summarized ...
• ...
• vignettes/asuri.Rmd#L420 nrow = length( ...
i See https://contributions.bioconductor.org/r-code.html
i See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
i Maintainer is subscribed to bioc-devel.
* Checking for support site registration...
i Maintainer is registered at support site.
i Package is in the Support Site Watched Tags.
── BiocCheck v1.45.18 results ──────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | i 6 NOTES
i See the asuri.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.

nebbiolo2 BUILD BIN output

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