Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/PloidyPeaks

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)/x86_64	ERROR	skipped	skipped	skipped

nebbiolo2 Summary

[top]

Package: PloidyPeaks

Version: 0.99.12

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PloidyPeaks

BuildTime: 0 minutes 27.70 seconds

CheckCommand:

CheckTime:

BuildBinCommand:

BuildBinTime:

PackageFileSize: -1.00 KiB

BuildID:: PloidyPeaks_20250922072734

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: PloidyPeaks. Starting Build package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

[top]

===============================

 R CMD BUILD

===============================

* checking for file ‘PloidyPeaks/DESCRIPTION’ ... OK
* preparing ‘PloidyPeaks’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ploidyPeaks.Rmd’ using rmarkdown

Quitting from ploidyPeaks.Rmd:396-408 [unnamed-chunk-23]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object 'name' not found
---
Backtrace:
    ▆
 1. └─PloidyPeaks::rectGateFlowFrame(...)
 2.   └─ggcyto:::`+.ggcyto_flowSet`(ggcyto::as.ggplot(rawDataPlot), ggcyto::as.ggplot(gatedDataPlot))
 3.     └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'ploidyPeaks.Rmd' failed with diagnostics:
object 'name' not found
--- failed re-building ‘ploidyPeaks.Rmd’

SUMMARY: processing the following file failed:
  ‘ploidyPeaks.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

[top]

nebbiolo2 BUILD BIN output

[top]