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URL:  https://git.bioconductor.org/packages/lcmsPlot
Last Changed Rev:  / Revision: 
Last Changed Date: 

Hostname OS /Arch BUILD CHECK BUILD BIN POST-PROCESSING
nebbiolo2 Linux (Ubuntu 24.04.3 LTS)/x86_64   ERROR     skipped     skipped     skipped  

nebbiolo2 Summary

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Package: lcmsPlot
Version: 0.99.2
RVersion: 4.5
BiocVersion: 3.22
BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data lcmsPlot
BuildTime: 1 minutes 17.93 seconds
CheckCommand:
CheckTime:
BuildBinCommand:
BuildBinTime:
PackageFileSize: -1.00 KiB
BuildID:: lcmsPlot_20251006112107
PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: lcmsPlot. Starting Build package.
PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 1.

nebbiolo2 BUILD SRC output

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 R CMD BUILD

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* checking for file ‘lcmsPlot/DESCRIPTION’ ... OK
* preparing ‘lcmsPlot’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘creating_publication_ready_plots.Rmd’ using rmarkdown
--- finished re-building ‘creating_publication_ready_plots.Rmd’

--- re-building ‘lcms_data_plotting.Rmd’ using rmarkdown

Quitting from lcms_data_plotting.Rmd:223-225 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'param' in selecting a method for function 'adjustRtime': could not find function "ObiwarpParam"
---
Backtrace:
    ▆
 1. ├─xcms::adjustRtime(faahko, param = ObiwarpParam(binSize = 0.6))
 2. └─base::.handleSimpleError(...)
 3.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'lcms_data_plotting.Rmd' failed with diagnostics:
error in evaluating the argument 'param' in selecting a method for function 'adjustRtime': could not find function "ObiwarpParam"
--- failed re-building ‘lcms_data_plotting.Rmd’

SUMMARY: processing the following file failed:
  ‘lcms_data_plotting.Rmd’

Error: Vignette re-building failed.
Execution halted

nebbiolo2 CHECK output

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nebbiolo2 BUILD BIN output
 
                    			
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