===============================
R CMD BUILD
===============================
* checking for file ‘CBN2Path/DESCRIPTION’ ... OK
* preparing ‘CBN2Path’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘CBN2Path.Rmd’ using rmarkdown
/usr/bin/tar: This does not look like a tar archive
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
Quitting from CBN2Path.Rmd:53-63 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `GDCprepare()`:
! I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
---
Backtrace:
▆
1. └─CBN2Path::getRawTCGAData("TCGA-BLCA")
2. └─TCGAbiolinks::GDCprepare(query)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'CBN2Path.Rmd' failed with diagnostics:
I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
--- failed re-building ‘CBN2Path.Rmd’
SUMMARY: processing the following file failed:
‘CBN2Path.Rmd’
Error: Vignette re-building failed.
Execution halted