Bioconductor Single Package Builder - Build History

Snapshot Date:

URL: https://git.bioconductor.org/packages/GXwasR

Last Changed Rev: / Revision:

Last Changed Date:

Hostname	OS /Arch	BUILD	CHECK	BUILD BIN	POST-PROCESSING
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)/x86_64	OK	ERROR	skipped	OK

nebbiolo2 Summary

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Package: GXwasR

Version: 0.99.1

RVersion: 4.5

BiocVersion: 3.22

BuildCommand: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GXwasR

BuildTime: 3 minutes 31.57 seconds

CheckCommand: BiocCheckGitClone('GXwasR') && /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --no-vignettes --timings --library=/home/pkgbuild/packagebuilder/workers/jobs/3911/R-libs --install=check:/home/pkgbuild/packagebuilder/workers/jobs/3911/52839c3e53179d813dc1a3f009c2666062ade386/GXwasR.install-out.txt GXwasR_0.99.1.tar.gz && BiocCheck('GXwasR_0.99.1.tar.gz', `new-package`=TRUE)

CheckTime: 7 minutes 29.68 seconds

BuildBinCommand:

BuildBinTime:

PackageFileSize: 3179.31 KiB

BuildID:: GXwasR_20251029191352

PreProcessing: Starting Git clone. Installing dependencies. Checking Git Clone. Installing package: GXwasR. Starting Build package. Starting Check package.

PostProcessing: Finished Git clone. Package type: Software. Installing dependency status: 0. Checking git clone status: 0. Installing package status: 0. Build Package status: 0. Adding Build Product Information to Database.Checking Package status: 1.

nebbiolo2 BUILD SRC output

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===============================

 R CMD BUILD

===============================

* checking for file ‘GXwasR/DESCRIPTION’ ... OK
* preparing ‘GXwasR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required namespace: GXwasR
* saving partial Rd database
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a ‘data/datalist’ file should be added
* building ‘GXwasR_0.99.1.tar.gz’

nebbiolo2 CHECK output

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===============================

 BiocCheckGitClone('GXwasR')

===============================

→ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/52839c3e53179d813dc1a3f009c2666062ade386/GXwasR
→ BiocVersion: 3.22
→ Package: GXwasR
→ PackageVersion: 0.99.1
→ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/52839c3e53179d813dc1a3f009c2666062ade386/GXwasR.BiocCheck
→ BiocCheckVersion: 1.45.20
→ sourceDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/52839c3e53179d813dc1a3f009c2666062ade386/GXwasR
→ installDir: NULL
→ isTarBall: FALSE
→ platform: unix
* Checking valid files...
* Checking individual file sizes...
* Checking for stray BiocCheck output folders...
* Checking for inst/doc folders...
* Checking if DESCRIPTION is well formatted...
* Checking NAMESPACE...
* Checking for valid maintainer...
* Checking CITATION...
* Checking that provided CITATION file is correctly formatted...
── BiocCheck v1.45.20 results ──────────────────────────────────────────────────
✖ 0 ERRORS | ⚠ 0 WARNINGS | i 0 NOTES
i For more details, run
  browseVignettes(package = 'BiocCheck')




===============================

 R CMD CHECK

===============================

* using log directory ‘/home/pkgbuild/packagebuilder/workers/jobs/3911/52839c3e53179d813dc1a3f009c2666062ade386/GXwasR.Rcheck’
* using R version 4.5.1 Patched (2025-08-23 r88802)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GXwasR/DESCRIPTION’ ... OK
* this is package ‘GXwasR’ version ‘0.99.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... INFO
Imports includes 31 non-default packages.
Importing from so many packages makes the package vulnerable to any of
them becoming unavailable.  Move as many as possible to Suggests and
use conditionally.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘GXwasR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [12s/12s] OK
* checking whether the package can be loaded with stated dependencies ... [12s/12s] OK
* checking whether the package can be unloaded cleanly ... [11s/11s] OK
* checking whether the namespace can be loaded with stated dependencies ... [11s/11s] OK
* checking whether the namespace can be unloaded cleanly ... [12s/12s] OK
* checking loading without being on the library search path ... [12s/12s] OK
* checking whether startup messages can be suppressed ... [12s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [51s/51s] OK
* checking Rd files ... [13s/13s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [145s/143s] OK
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
TestXGene      10.385  8.382  17.449
PvalComb       12.735  0.659  13.396
GXwas           8.986  0.523   9.285
GeneticCorrBT   5.187  2.394   8.654
SumstatGenCorr  7.393  0.133   7.525
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [17s/18s]
 [18s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... [4s/4s] OK
* DONE

Status: OK





===============================

 BiocCheck('GXwasR_0.99.1.tar.gz')

===============================

── Installing GXwasR ───────────────────────────────────────────────────────────
✔ Package installed successfully
── GXwasR session metadata ─────────────────────────────────────────────────────
→ sourceDir: /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR
→ BiocVersion: 3.22
→ Package: GXwasR
→ PackageVersion: 0.99.1
→ BiocCheckDir: /home/pkgbuild/packagebuilder/workers/jobs/3911/52839c3e53179d813dc1a3f009c2666062ade386/GXwasR.BiocCheck
→ BiocCheckVersion: 1.45.20
→ sourceDir: /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR
→ installDir: /tmp/RtmpZiV9fN/file2dc56b5533b837
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on GXwasR ─────────────────────────────────────────────────
* Checking for deprecated package usage...

* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking new package version number...
* Checking R version dependency...
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
i Bioconductor dependencies found in Imports & Depends (24%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
i NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
i NOTE: Vignette(s) found with missing chunk labels
Found in files:
• gwas_models.Rmd
• ...
• preimputationQC.Rmd
! WARNING: Avoid T/F variables; If logical, use TRUE/FALSE
Found in files:
• vignettes/preimputationQC.Rmd (chunk no. 11, line 193, column 110)
* Checking whether vignette is built with 'R CMD build'...
* Checking package installation calls in R code...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
* Checking for library/require of GXwasR...
* Checking coding practice...
i NOTE: Avoid 'cat' and 'print' outside of 'show' methods
Found in files:
• print() in R/GXwasR_helper_functions.R (line 2042, column 9)
• ...
• print() in R/GXwasR_helper_functions.R (line 2146, column 9)
i NOTE: Avoid redundant 'stop' and 'warn*' in signal conditions
Found in files:
• R/GXwasR_helper_functions.R (line 191, column 18)
• ...
• R/GXwasR_main_functions.R (line 6098, column 21)
* Checking parsed R code in R directory, examples, vignettes...
i NOTE: Avoid 'suppressWarnings'/'*Messages' if possible (found 58 times)
• suppressWarnings() in R/GXwasR_helper_functions.R (line 284, column 9)
• ...
• suppressWarnings() in R/GXwasR_main_functions.R (line 4377, column 31)
* Checking function lengths...
i NOTE: The recommended function length is 50 lines or less. There are 73
functions greater than 50 lines.
The longest 5 functions are:
• HDL.rg.parallel() (R/GXwasR_helper_functions.R): 768 lines
• ...
• AncestryCheck() (R/GXwasR_main_functions.R): 227 lines
* Checking man page documentation...
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:35: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:36: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:57: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/AncestryCheck.Rd:125: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:74: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ClumpLD.Rd:97: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:50: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/ComputeGeneticPC.Rd:73: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:26: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/DummyCovar.Rd:43: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:94: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:104: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:127: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:168: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:169: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/EstimateHerit.Rd:217: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:72: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GeneticCorrBT.Rd:134: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:63: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:102: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:103: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:110: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:113: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:122: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/GXwas.Rd:211: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:34: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:117: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:119: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/MetaGWAS.Rd:147: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:51: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:53: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/PvalComb.Rd:110: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:77: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/QCsnp.Rd:118: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:60: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SexCheck.Rd:94: unknown macro '\insertAllCited'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/SumstatGenCorr.Rd:97: unknown macro '\insertRef'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:107: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:178: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:179: unknown macro '\insertCite'
Warning in tools::parse_Rd(manpage, macros = rdmacros) :
  /tmp/RtmpZiV9fN/file2dc56b396c37e3/GXwasR/man/TestXGene.Rd:228: unknown macro '\insertAllCited'
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
i NOTE: skip_on_bioc() found in testthat files: test-AncestryCheck.R
test-clumpedResult.R test-ComputeGeneticPC.R test-ComputeLD.R test-ComputePRS.R
test-DummyCovar.R test-EstimateHerit.R test-executePlinkMAF.R
test-FilterPlinkSample.R test-FilterRegion.R test-FilterSNP.R
test-GeneticCorrBT.R test-GetMFPlink.R test-GXwas.R test-GXWASmiami.R
test-LDPrune.R test-MAFdiffSexControl.R test-MergeRegion.R test-MetaGWAS.R
test-PlinkSummary.R test-plinkVCF.R test-PvalComb.R test-QCSample.R
test-QCsnp.R test-SexCheck.R test-TestXGene.R test-Xhwe.R
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
i NOTE: Consider shorter lines; 3270 lines (17%) are > 80 characters long.
First few lines:
• R/datasets.R#L29 #' Example dataset for h2 estimation bet ...
• ...
• vignettes/preimputationQC.Rmd#L407 RefManageR::PrintBibliography(bib, .opts
  ...
i NOTE: Consider 4 spaces instead of tabs; 1 lines (0%) contain tabs.
First few lines:
• vignettes/postimputationQC.Rmd#L92 -**(D) Sex-specific QC at sample level:
  ...
i NOTE: Consider multiples of 4 spaces for line indents; 290 lines (1%) are
not.
First few lines:
• R/GXwasR_helper_functions.R#L1433 chunks, chunk, ResultDir, DataDir, ...
• ...
• vignettes/postimputationQC.Rmd#L161 ...
i See https://contributions.bioconductor.org/r-code.html
i See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking if new package already exists in Bioconductor...
* Checking for bioc-devel mailing list subscription...
✖ ERROR: Subscribe to the Bioc-devel mailing list by going to
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
i Maintainer is registered at support site.
✖ ERROR: Add package to Watched Tags in your Support Site profile; visit
https://support.bioconductor.org/accounts/edit/profile
── BiocCheck v1.45.20 results ──────────────────────────────────────────────────
✖ 2 ERRORS | ⚠ 1 WARNINGS | i 10 NOTES
i See the GXwasR.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.

nebbiolo2 BUILD BIN output

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