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R CMD BUILD
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* checking for file ‘StatescopeR/DESCRIPTION’ ... OK
* preparing ‘StatescopeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘StatescopeR.Rmd’ using rmarkdown
Quitting from StatescopeR.Rmd:90-113 [Prepare scRNAseq data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called 'rtracklayer'
---
Backtrace:
▆
1. ├─base::suppressMessages(library(scRNAseq))
2. │ └─base::withCallingHandlers(...)
3. └─base::library(scRNAseq)
4. └─base::tryCatch(...)
5. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'StatescopeR.Rmd' failed with diagnostics:
package or namespace load failed for 'scRNAseq' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
there is no package called 'rtracklayer'
--- failed re-building ‘StatescopeR.Rmd’
SUMMARY: processing the following file failed:
‘StatescopeR.Rmd’
Error: Vignette re-building failed.
Execution halted